View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1967_low_4 (Length: 310)

Name: NF1967_low_4
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1967_low_4
NF1967_low_4
[»] chr2 (10 HSPs)
chr2 (11-295)||(33009740-33010026)
chr2 (237-287)||(14942046-14942096)
chr2 (237-287)||(29846518-29846568)
chr2 (237-287)||(42769760-42769810)
chr2 (237-287)||(14186440-14186490)
chr2 (237-287)||(19181624-19181674)
chr2 (240-285)||(6318463-6318508)
chr2 (247-287)||(3956648-3956688)
chr2 (237-285)||(40277290-40277338)
chr2 (237-285)||(14539706-14539754)
[»] chr7 (14 HSPs)
chr7 (197-284)||(33057619-33057706)
chr7 (237-287)||(10576749-10576799)
chr7 (221-287)||(19334546-19334612)
chr7 (237-287)||(34707192-34707242)
chr7 (199-287)||(24320403-24320491)
chr7 (240-287)||(17303119-17303166)
chr7 (240-287)||(29238148-29238195)
chr7 (240-287)||(34259594-34259641)
chr7 (237-287)||(32876532-32876582)
chr7 (240-295)||(10334245-10334301)
chr7 (242-286)||(29981120-29981164)
chr7 (240-287)||(43342486-43342533)
chr7 (240-286)||(15017850-15017896)
chr7 (237-287)||(44164745-44164795)
[»] chr4 (15 HSPs)
chr4 (238-288)||(11054531-11054581)
chr4 (237-287)||(36851389-36851439)
chr4 (199-287)||(34241069-34241157)
chr4 (199-286)||(25954827-25954914)
chr4 (237-287)||(1535847-1535897)
chr4 (197-287)||(46474070-46474160)
chr4 (237-287)||(49284433-49284483)
chr4 (237-286)||(20818644-20818693)
chr4 (237-295)||(54090247-54090306)
chr4 (237-287)||(36012187-36012237)
chr4 (229-287)||(47084088-47084146)
chr4 (229-286)||(19124732-19124789)
chr4 (229-285)||(37801258-37801314)
chr4 (237-284)||(17888552-17888599)
chr4 (241-284)||(31377469-31377512)
[»] chr6 (7 HSPs)
chr6 (222-287)||(1727920-1727985)
chr6 (237-287)||(13627616-13627666)
chr6 (237-286)||(24694653-24694702)
chr6 (237-285)||(14309800-14309848)
chr6 (237-289)||(13103120-13103172)
chr6 (240-287)||(9231859-9231906)
chr6 (240-287)||(11084666-11084713)
[»] chr8 (12 HSPs)
chr8 (228-288)||(19334858-19334918)
chr8 (237-287)||(21525434-21525484)
chr8 (237-287)||(26021472-26021522)
chr8 (237-286)||(42013949-42013998)
chr8 (226-285)||(16591366-16591425)
chr8 (240-287)||(42072504-42072551)
chr8 (237-287)||(22324672-22324722)
chr8 (237-287)||(33934371-33934421)
chr8 (237-287)||(35806870-35806920)
chr8 (237-285)||(16523184-16523232)
chr8 (242-286)||(24065350-24065394)
chr8 (237-285)||(43282853-43282901)
[»] chr3 (16 HSPs)
chr3 (240-287)||(32352923-32352970)
chr3 (237-287)||(1781838-1781888)
chr3 (237-287)||(44994970-44995020)
chr3 (237-285)||(21853275-21853323)
chr3 (237-295)||(27642727-27642786)
chr3 (229-284)||(36539711-36539766)
chr3 (237-287)||(40845919-40845969)
chr3 (237-287)||(43347338-43347388)
chr3 (237-285)||(3178781-3178829)
chr3 (237-285)||(8950506-8950554)
chr3 (237-285)||(13856177-13856225)
chr3 (240-295)||(19649377-19649433)
chr3 (237-288)||(10839382-10839433)
chr3 (248-287)||(20382595-20382634)
chr3 (238-287)||(5391533-5391583)
chr3 (197-273)||(54378656-54378731)
[»] chr5 (16 HSPs)
chr5 (237-287)||(15631690-15631740)
chr5 (237-287)||(38397674-38397724)
chr5 (226-287)||(23218561-23218622)
chr5 (237-284)||(8456965-8457012)
chr5 (240-287)||(10081221-10081268)
chr5 (235-286)||(27916217-27916268)
chr5 (237-288)||(36769076-36769127)
chr5 (237-287)||(6257412-6257462)
chr5 (237-287)||(37169035-37169085)
chr5 (237-286)||(16618572-16618621)
chr5 (240-287)||(39862492-39862539)
chr5 (237-295)||(29491416-29491474)
chr5 (238-288)||(42119697-42119747)
chr5 (240-285)||(614397-614442)
chr5 (238-286)||(25560330-25560378)
chr5 (241-289)||(29790225-29790273)
[»] chr1 (13 HSPs)
chr1 (237-287)||(49902544-49902594)
chr1 (237-286)||(42517296-42517345)
chr1 (219-287)||(10907632-10907700)
chr1 (237-287)||(3346862-3346912)
chr1 (237-287)||(38859927-38859977)
chr1 (237-287)||(42456648-42456698)
chr1 (237-286)||(47022779-47022828)
chr1 (240-285)||(48392411-48392456)
chr1 (241-285)||(37189718-37189762)
chr1 (240-287)||(7742784-7742831)
chr1 (237-287)||(5975064-5975114)
chr1 (240-286)||(10156021-10156067)
chr1 (229-286)||(26835415-26835472)
[»] scaffold0086 (1 HSPs)
scaffold0086 (240-285)||(20836-20881)
[»] scaffold0045 (1 HSPs)
scaffold0045 (240-285)||(34457-34502)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 33010026 - 33009740
Alignment:
Q  11 cagagagataatttgacggaatacacatttactattgggtgataatgtaaaattattttacatttttaatgtgtaacctatatatgagagagactttttt 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33010026 cagagagataatttgacggaatacacatttactattgagtgataatgtaaaattattttacattttgaatgtgtaacctatatatgagagagactttttt 33009927  T
Q  111 -cattaatagtttgattgcacattgagtannnnnnnaagcgaaagaaaaaatagattaaacagaagagaaatataaaagactaggctatgggcggttcta 209  Q
     ||||||||||||||||||||||||||||       |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  33009926 tcattaatagtttgattgcacattgagtatttttttaagcgaaaaaaaaaatagattaaatagaagagaaatataaaagactaggccatgggcggttcta 33009827  T
Q  210 tggtccgatgaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaa-ccttataaat 295  Q
    ||| |||  |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  33009826 tggcccggcgaccccaggttccggattaaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaat 33009740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 14942046 - 14942096
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  14942046 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 14942096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 29846568 - 29846518
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  29846568 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 29846518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 42769760 - 42769810
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  42769760 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 42769810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 14186440 - 14186490
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||| |||||||| | ||||||||||||||||| |||||||||||    
T  14186440 aaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacc 14186490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 19181674 - 19181624
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||| ||||||||||| |||||||||||    
T  19181674 aaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacc 19181624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 6318463 - 6318508
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||    
T  6318463 tttttttcaatttcttatgtaaatccctatgaatttcttatataaa 6318508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 3956688 - 3956648
Alignment:
Q  247 caatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  3956688 caattttttatgtaaatccctatgaatttattatataaacc 3956648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 40277290 - 40277338
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  40277290 aaattttttgcaattttttatgtaaatccctataaatttcttatataaa 40277338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 14539706 - 14539754
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||||||||||||||| ||| | ||| ||||||| |||||||||    
T  14539706 aaattttttgcaatttcttatgtaatttcctctgaatttcttatataaa 14539754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 33057619 - 33057706
Alignment:
Q  197 atgggcggttctatggtccgatgaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataa 284  Q
    |||||||||||||||| |||  |||||| || ||||| | || |||||| ||||||||||| ||||||||||||||||| ||||||||    
T  33057619 atgggcggttctatggcccggcgaccccgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataa 33057706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 10576799 - 10576749
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  10576799 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 10576749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 19334546 - 19334612
Alignment:
Q  221 ccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||| ||| | || |||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  19334546 ccccaggtttcggcccaatttttttgcaatttcttatgtaaatacctatgaatttcttatataaacc 19334612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 34707242 - 34707192
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  34707242 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 34707192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 24320403 - 24320491
Alignment:
Q  199 gggcggttctatggtccgatgaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||| || |||| || ||| || ||||| | ||||||||||||||||||| | ||||| |||| |||||| |||||||||||    
T  24320403 gggcggttctaaggcccgacgaacccgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacc 24320491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 17303119 - 17303166
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  17303119 ttttttgcaatttcttatgtaaattcctatgaatttcttatataaacc 17303166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 29238148 - 29238195
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||    
T  29238148 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 29238195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 34259641 - 34259594
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||    
T  34259641 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 34259594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 32876532 - 32876582
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | || |||||||||||||| |||||||||||    
T  32876532 aaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacc 32876582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 10334301 - 10334245
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaac-cttataaat 295  Q
    |||||||||||||||||| ||||| ||| ||||||| |||||||||| |||||||||    
T  10334301 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaat 10334245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 29981120 - 29981164
Alignment:
Q  242 ttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||    
T  29981120 ttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29981164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 43342533 - 43342486
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||||| ||||| ||| ||||||| |||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacc 43342486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 15017896 - 15017850
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    |||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaac 15017850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 44164745 - 44164795
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | |||||  |||||||||| |||||||||||    
T  44164745 aaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacc 44164795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 11054581 - 11054531
Alignment:
Q  238 aattttttgcaatttcttatataaatccctatgaatttattatataaacct 288  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  11054581 aattttttgcaatttcttatgtaaatccctatgaatttcttatataaacct 11054531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 36851389 - 36851439
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  36851389 aaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacc 36851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 34241157 - 34241069
Alignment:
Q  199 gggcggttctatggtccgatgaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||| || |||  |||||| || ||||| | ||||||||||||||||||| | || |||||||||||||| |||||||||||    
T  34241157 gggcggttctaaggcccggcgaccccgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacc 34241069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 25954914 - 25954827
Alignment:
Q  199 gggcggttctatggtccgatgaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||| || |||  |||||| || ||||| | ||||||||||||||||||| | ||||| ||||||||||| ||||||||||    
T  25954914 gggcggttctaaggcccggcgaccccgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 25954827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 1535897 - 1535847
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  1535897 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 1535847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 46474160 - 46474070
Alignment:
Q  197 atgggcggttctatggtccgatgaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||||  |  |||  | ||||| | ||||||||||||||||||||| ||||| ||| ||||||| |||||||||||    
T  46474160 atgggcggttctatggtccggcgtgcccgagctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacc 46474070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 49284483 - 49284433
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  49284483 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 49284433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 20818693 - 20818644
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  20818693 aaattttttgcaatttcttttgtaaatccctatgaatttcttatataaac 20818644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 54090306 - 54090247
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaac-cttataaat 295  Q
    ||||||||||||||| ||| | ||||||||| |||||||||||||||||| |||||||||    
T  54090306 aaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaat 54090247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 36012187 - 36012237
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| || | ||||||||||||||||| |||||||||||    
T  36012187 aaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacc 36012237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 47084146 - 47084088
Alignment:
Q  229 tccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||| ||||||||||||||||||||||| |||||  || ||||||| |||||||||||    
T  47084146 tccggcctaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacc 47084088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 19124732 - 19124789
Alignment:
Q  229 tccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||| |||| |||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  19124732 tccggcctaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaac 19124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 37801258 - 37801314
Alignment:
Q  229 tccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||| ||||||||||||||||||||| | |||||  |||||||||| |||||||||    
T  37801258 tccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaa 37801314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 17888552 - 17888599
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataa 284  Q
    ||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  17888552 aaatttttttcaatttcttatgtaaattcctatgaatttcttatataa 17888599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 31377512 - 31377469
Alignment:
Q  241 tttttgcaatttcttatataaatccctatgaatttattatataa 284  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  31377512 ttttttcaatttcttatgtaaatccctatgaatttcttatataa 31377469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 1727920 - 1727985
Alignment:
Q  222 cccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||| ||||| | ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  1727920 cccaggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 1727985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 13627666 - 13627616
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  13627666 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 13627616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 24694653 - 24694702
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  24694653 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 24694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 14309800 - 14309848
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  14309800 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 14309848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 13103120 - 13103172
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacctt 289  Q
    |||||||||||||||| |||| ||||| ||| ||||||| |||||||||||||    
T  13103120 aaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctt 13103172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 9231859 - 9231906
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| | |||||| |||||||||| |||||||||||    
T  9231859 ttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacc 9231906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 11084713 - 11084666
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| | ||||| ||||||||||| |||||||||||    
T  11084713 ttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacc 11084666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 19334918 - 19334858
Alignment:
Q  228 ttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacct 288  Q
    |||||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  19334918 ttccggcccaaattttttgcaatttcttatataaattcttatgaattttttatataaacct 19334858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 21525484 - 21525434
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  21525484 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 21525434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 26021522 - 26021472
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  26021522 aaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacc 26021472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 42013998 - 42013949
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  42013998 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42013949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 16591366 - 16591425
Alignment:
Q  226 ggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    |||||||| ||||||||||||||||||||||| |||||  ||| |||||| |||||||||    
T  16591366 ggttccggcctaaattttttgcaatttcttatgtaaatttctaagaatttcttatataaa 16591425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 42072551 - 42072504
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||    
T  42072551 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 42072504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 22324722 - 22324672
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||| |||||||| | ||||||||||||||||| |||||||||||    
T  22324722 aaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacc 22324672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 33934371 - 33934421
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||| ||||||||||| |||||||||||    
T  33934371 aaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacc 33934421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 35806920 - 35806870
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | |||||| |||||||||| |||||||||||    
T  35806920 aaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacc 35806870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 16523232 - 16523184
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||| ||||||| ||| ||||||||||||||||| |||||||||    
T  16523232 aaattttttacaatttcatatgtaaatccctatgaatttcttatataaa 16523184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 24065394 - 24065350
Alignment:
Q  242 ttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||    
T  24065394 ttttgcaatttctcatataaatctctatgaatttcttatataaac 24065350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 43282853 - 43282901
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||| ||||||||||| ||||| | | |||||||||||||||||    
T  43282853 aaattttttacaatttcttatgtaaattcttctgaatttattatataaa 43282901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 32352970 - 32352923
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  32352970 ttttttgcaatttcttgtataaatccctatgaatttcttatataaacc 32352923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 1781888 - 1781838
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||||||||||    
T  1781888 aaattttttgcaatttcttatgtaaatccctctgaatttcttatataaacc 1781838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 44994970 - 44995020
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  44994970 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 44995020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 21853323 - 21853275
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  21853323 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 21853275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 27642786 - 27642727
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa-ccttataaat 295  Q
    ||||||||||||||||||||| ||||||| | ||||||| ||||||||| ||||||||||    
T  27642786 aaattttttgcaatttcttatgtaaatccttttgaatttcttatataaatccttataaat 27642727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 36539766 - 36539711
Alignment:
Q  229 tccggactaaattttttgcaatttcttatataaatccctatgaatttattatataa 284  Q
    ||||| ||||||||| ||||||||||||| ||||||||||| ||||| ||||||||    
T  36539766 tccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataa 36539711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 40845919 - 40845969
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| || | ||||||||||||||||| |||||||||||    
T  40845919 aaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacc 40845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 43347338 - 43347388
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||||| ||||| ||| ||||||| |||||||||||    
T  43347338 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacc 43347388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 3178829 - 3178781
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||| ||||||||| | ||||||||||||||||| |||||||||    
T  3178829 aaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaa 3178781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 8950506 - 8950554
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||||||||||||| | ||||| ||||||||||| |||||||||    
T  8950506 aaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaa 8950554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 13856225 - 13856177
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||| ||||||||| | ||||||||||||||||| |||||||||    
T  13856225 aaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaa 13856177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 19649377 - 19649433
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaa-ccttataaat 295  Q
    ||||||| |||||||||| |||||| |||||||||| ||||||||| ||||||||||    
T  19649377 ttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaat 19649433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 10839382 - 10839433
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacct 288  Q
    ||||||||||||||||||||| |||||  || ||||||| ||||||||||||    
T  10839382 aaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacct 10839433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 20382634 - 20382595
Alignment:
Q  248 aatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  20382634 aatttcttatgtaaatccctatgaatttcttatataaacc 20382595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 5391583 - 5391533
Alignment:
Q  238 aattttttg-caatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||| ||||||||| | ||||||||||||||||| |||||||||||    
T  5391583 aattttttgacaatttcttgtgtaaatccctatgaatttcttatataaacc 5391533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 54378731 - 54378656
Alignment:
Q  197 atgggcggttctatggtccgatgaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaat 273  Q
    |||||||||||||||| |||  |||| | |||||||| | || |||||| ||||||||||| ||||||| |||||||    
T  54378731 atgggcggttctatggcccggcgacctcgggttccggcccaattttttt-caatttcttatctaaatccttatgaat 54378656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 15631740 - 15631690
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  15631740 aaattttttacaatttcttgtataaatccctatgaatttcttatataaacc 15631690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 38397724 - 38397674
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  38397724 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 38397674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 23218622 - 23218561
Alignment:
Q  226 ggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||| | ||| ||||||||||||||| | ||||||||||||||||| |||||||||||    
T  23218622 ggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 23218561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 284
Target Start/End: Original strand, 8456965 - 8457012
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataa 284  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  8456965 aaatttttttcaatttcttatgtaaatccctatgaatttcttatataa 8457012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 10081268 - 10081221
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  10081268 tttttttcaatttcttatgtaaatccctatgaatttcttatataaacc 10081221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 27916268 - 27916217
Alignment:
Q  235 ctaaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  27916268 ctaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaac 27916217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 36769076 - 36769127
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacct 288  Q
    ||||||||||||||||||||| ||||| ||| ||||||| ||||||||||||    
T  36769076 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacct 36769127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 6257412 - 6257462
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||| |||||    
T  6257412 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacc 6257462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 37169035 - 37169085
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| || | ||||||||||||||||| |||||||||||    
T  37169035 aaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacc 37169085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 16618572 - 16618621
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||| ||||||||| | ||||||||||||||||| ||||||||||    
T  16618572 aaattttttacaatttcttgtgtaaatccctatgaatttcttatataaac 16618621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 39862492 - 39862539
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| | ||||| ||||||||||| |||||||||||    
T  39862492 ttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacc 39862539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 29491416 - 29491474
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaaccttataaat 295  Q
    |||| |||||||||||||||| |||||  |||||||||| |||||||| || |||||||    
T  29491416 aaatcttttgcaatttcttatgtaaatttctatgaatttcttatataacccctataaat 29491474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 42119747 - 42119697
Alignment:
Q  238 aattttttgcaatttcttatataaatccctatgaatttattatataaacct 288  Q
    ||||||||| |||||||||| ||||| ||| ||||||| ||||||||||||    
T  42119747 aattttttgtaatttcttatgtaaattcctctgaatttcttatataaacct 42119697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 614397 - 614442
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    |||||||||||||||||| ||||| ||| ||||||| |||||||||    
T  614397 ttttttgcaatttcttatgtaaattcctctgaattttttatataaa 614442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 25560330 - 25560378
Alignment:
Q  238 aattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    |||||||| ||||||||||| ||||||| ||| ||||| ||||||||||    
T  25560330 aatttttttcaatttcttatgtaaatccttataaatttcttatataaac 25560378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 29790225 - 29790273
Alignment:
Q  241 tttttgcaatttcttatataaatccctatgaatttattatataaacctt 289  Q
    ||||| ||||||||||| ||||| | ||||||||| |||||||||||||    
T  29790225 tttttacaatttcttatgtaaattcttatgaatttcttatataaacctt 29790273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 49902594 - 49902544
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  49902594 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 49902544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 42517296 - 42517345
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  42517296 aaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42517345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 10907632 - 10907700
Alignment:
Q  219 gaccccaggttccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||| || ||||| | ||||||||||||||||||||| ||||| ||| ||||||| |||||||||||    
T  10907632 gaccccgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacc 10907700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 3346912 - 3346862
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| || | ||||||||||||||||| |||||||||||    
T  3346912 aaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacc 3346862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 38859977 - 38859927
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||    
T  38859977 aaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacc 38859927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 42456698 - 42456648
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  42456698 aaattttttgctatttcttatgtaaattcctatgaatttcttatataaacc 42456648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 47022828 - 47022779
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||||||||||||||||| | |||||| |||||||||| ||||||||||    
T  47022828 aaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 47022779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 48392411 - 48392456
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||    
T  48392411 ttttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 48392456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 37189762 - 37189718
Alignment:
Q  241 tttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||    
T  37189762 tttttgcaatttcttatgtaaatctctatgaatttcttatataaa 37189718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 7742784 - 7742831
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    |||||||||||||||| | ||||||| ||||||||| |||||||||||    
T  7742784 ttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacc 7742831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 5975114 - 5975064
Alignment:
Q  237 aaattttttgcaatttcttatataaatccctatgaatttattatataaacc 287  Q
    ||||||||| ||||||||| | |||||||||| |||||| |||||||||||    
T  5975114 aaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacc 5975064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 10156021 - 10156067
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    |||||||||||||||| | ||||| ||||||||||| ||||||||||    
T  10156021 ttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 10156067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 26835472 - 26835415
Alignment:
Q  229 tccggactaaattttttgcaatttcttatataaatccctatgaatttattatataaac 286  Q
    ||||| |||| ||||||||||||| |||| ||||| | ||||||||| ||||||||||    
T  26835472 tccggcctaatttttttgcaatttattatgtaaattcatatgaatttcttatataaac 26835415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 20836 - 20881
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    |||||||||||||||||| ||||| ||| ||||||| |||||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaa 20881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 34457 - 34502
Alignment:
Q  240 ttttttgcaatttcttatataaatccctatgaatttattatataaa 285  Q
    |||||||||||||||||| ||||||||| ||||||  |||||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaa 34502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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