View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1967_low_5 (Length: 291)
Name: NF1967_low_5
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1967_low_5 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 48025440 - 48025163
Alignment:
| Q |
13 |
ataagtaggaaggaacatgagattaacagtaacttgcaacacacaacaaacagaaaatcttacactcatat-attatcaacaacaaaagcataacttata |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48025440 |
ataagtaggaaggaacatgagattaacagtaacttgcaacaca--acaaacagaaaatcttacactcatattattatcaacaacaaaagcataacttata |
48025343 |
T |
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| Q |
112 |
aactaattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaata |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48025342 |
aactaattcaactcaactcaaaaaacgatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaata |
48025243 |
T |
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| Q |
212 |
atcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48025242 |
atcaatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaa |
48025163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 55 - 291
Target Start/End: Complemental strand, 48020615 - 48020374
Alignment:
| Q |
55 |
acaacaaacagaaaatcttacactcatatattatcaacaacaaaagc-ataacttataaactaattcaactcaactcaa----aaaacaatagaaaattg |
149 |
Q |
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|||||||||| |||| ||||| || || ||||||||| |||||| | ||||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
48020615 |
acaacaaacatgaaatgttacattcttaaattatcaactacaaaaaccataacttataaactagttcatttcaactcaattgaaaaacaatagaaaatcc |
48020516 |
T |
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| Q |
150 |
acacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatcaatttcattctccttcaaaaactcctccagaatcc |
249 |
Q |
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| T |
48020515 |
actcactatggcaatttcccagctcgaaaaattgcaaatttagaagcaacagagtatgaataatcaattccattctccttcaagaactcctcaagaatgc |
48020416 |
T |
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| Q |
250 |
gtttagcttcttcaggatcagaactctcacactcaatctcaa |
291 |
Q |
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| T |
48020415 |
gtttggcttcttcaggatcagaactttcacattcaatctcaa |
48020374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 14210 - 13934
Alignment:
| Q |
23 |
aggaacatgagattaacagtaacttgcaaca--------cacaacaaacagaaaatcttacactcatatattatcaacaacaaaagcataacttataaac |
114 |
Q |
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| T |
14210 |
aggaacatgagattaacagtaacttgcacaatatggcaacacaacaaacagaaaatcttacactcatatattatcaacaacaaaagcataacttataaac |
14111 |
T |
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| Q |
115 |
taattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatc |
214 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14110 |
taattcaactcaactcaaaaaatgatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatc |
14011 |
T |
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| Q |
215 |
aatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| |
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| T |
14010 |
aatttcattctccttcaaaaactcctccagaatctgtttagcttcttcaggatcagagctttcacactcaatctcaa |
13934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 51935040 - 51934764
Alignment:
| Q |
23 |
aggaacatgagattaacagtaacttgcaaca--------cacaacaaacagaaaatcttacactcatatattatcaacaacaaaagcataacttataaac |
114 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51935040 |
aggaacatgagattaacagtaacttgcacaatatggcaacacaacaaacataaaatcttacactcatatattatcaacaacaaaaacataacttataaac |
51934941 |
T |
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| Q |
115 |
taattcaactcaactcaaaaaacaatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaacagagtatgaataatc |
214 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51934940 |
taattcaactcaactcaaaaaacgatagaaaattgacacactatggcaatttcccagatcgaaaaattgagaatttagaagcaaaagagtatgaataatc |
51934841 |
T |
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| Q |
215 |
aatttcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaa |
291 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51934840 |
aatatcattctccttcaaaaactcctccagaatccgtttagcttcttcaggatcagaactctcacactcaatctcaa |
51934764 |
T |
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