View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1967_low_7 (Length: 259)

Name: NF1967_low_7
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1967_low_7
NF1967_low_7
[»] scaffold0016 (2 HSPs)
scaffold0016 (12-259)||(48384-48631)
scaffold0016 (188-256)||(79168-79236)
[»] chr8 (8 HSPs)
chr8 (12-187)||(19472483-19472655)
chr8 (12-187)||(19543408-19543580)
chr8 (12-187)||(19589116-19589288)
chr8 (12-190)||(3479040-3479215)
chr8 (12-172)||(3785805-3785963)
chr8 (12-181)||(31909106-31909272)
chr8 (44-187)||(3788500-3788642)
chr8 (116-187)||(12062868-12062937)
[»] chr7 (5 HSPs)
chr7 (12-187)||(2576975-2577148)
chr7 (12-188)||(26389169-26389324)
chr7 (122-185)||(1773526-1773588)
chr7 (59-143)||(1715745-1715830)
chr7 (12-43)||(1773701-1773732)
[»] chr6 (2 HSPs)
chr6 (18-188)||(33638777-33638946)
chr6 (12-187)||(21146819-21146995)
[»] chr5 (3 HSPs)
chr5 (12-187)||(4215228-4215401)
chr5 (12-91)||(18587465-18587544)
chr5 (116-187)||(37498203-37498273)
[»] chr2 (2 HSPs)
chr2 (16-188)||(20509106-20509275)
chr2 (116-188)||(26608007-26608075)
[»] chr1 (2 HSPs)
chr1 (12-184)||(16385558-16385728)
chr1 (122-187)||(12685192-12685256)
[»] chr3 (4 HSPs)
chr3 (122-187)||(51306436-51306499)
chr3 (116-187)||(51308892-51308961)
chr3 (127-187)||(20871432-20871490)
chr3 (116-187)||(20868778-20868847)
[»] chr4 (1 HSPs)
chr4 (122-184)||(46432546-46432606)


Alignment Details
Target: scaffold0016 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 48384 - 48631
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 48483  T
Q  112 tccc-tcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaacaacaagaaattatgttaatataca 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48484 tcccttcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaacaacaagaaattatgttaatataca 48583  T
Q  211 tgttactatttaacatccatgatttattgaacttaaatagctttcacac 259  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||    
T  48584 tg-tactatttaacatccatgatttattgaacttaaatagctttcacac 48631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 79168 - 79236
Alignment:
Q  188 acaagaaattatgttaatatacatgttactatttaacatccatgatttattgaacttaaatagctttca 256  Q
    |||||||||||||||| |||| ||| || |||||||||||||||||||  |||||||||||||||||||    
T  79168 acaagaaattatgttagtatatatgctagtatttaacatccatgatttcctgaacttaaatagctttca 79236  T

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Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 19472655 - 19472483
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    ||||| |||||||    
T  19472655 atagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaact---ctttcacttttgta 19472559  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||   ||||| ||| |||||| ||||||||  |||||||| ||||||||| ||||||||||| ||||||||||||||    
T  19472558 tcatttcaactattttcaatataataatttcttaagcttt-ttctctctattttcatggatgccatgtttctcaaca 19472483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 19543580 - 19543408
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    ||||| |||||||    
T  19543580 atagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaact---ctttcacttttgta 19543484  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||   ||||| ||| |||||| ||||||||  |||||||| ||||||||| ||||||||||| ||||||||||||||    
T  19543483 tcatttcaactattttcaatataataatttcttaagcttt-ttctctctattttcatggatgccatgtttctcaaca 19543408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 19589116 - 19589288
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    ||||| |||||||    
T  19589116 atagatagtaatactcattttagagttagttaagggtactagtgtagtcactatatcagtcacaagttgactcttttgtaact---ctttcacttttgta 19589212  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||   ||||| ||| |||||| ||||||||  |||||||| ||||||||| ||||||||||| ||||||||||||||    
T  19589213 tcatttcaactattttcaatataataatttcttaagcttt-ttctctctattttcatggatgccatgtttctcaaca 19589288  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 3479040 - 3479215
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||||||||||||||||||||||||| ||||||||||| || || ||| |||||||||||||||| || |||||| |  || ||||| | ||| |    
T  3479040 atagatagttatactcattttagagttagtt-agggtattagtttagtccctacataagtcacaagttgactcatttgtaccgctc-tttcactgttgca 3479137  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaacaaca 190  Q
    ||   ||||| |||||||||||| ||||||| ||||  || || |||||| |||||||||||||||||||||||||||||    
T  3479138 tcttttcaactattatcaatacagtaattttttaag--tttttttctctattttcatggatgtcatgtttctcaacaaca 3479215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 3785963 - 3785805
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||| |||||||||||||||||||||| ||||| || | || ||||||||||||||||||||||| || |||||| | |  |||| | | |||||    
T  3785963 atagatagtgatactcattttagagttagtta-gggtactactatagtcactatataagtcacaagttgactcatttgtatc-acttttttattcttgta 3785866  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatg 172  Q
    ||   ||||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  3785865 tcatttcaactattatcaatacaataatttcctaagc-ttcttctctctattttcatggatg 3785805  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 31909272 - 31909106
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||| |||||||||||||||| |||||||| || |||| || ||||||||||||||||||||||| || |||||| || ||| ||  ||||||||    
T  31909272 atagatagtaatactcattttagagtaagttaagg-tactagtttagtcactatataagtcacaagttgactcatttgtacctctctctttcattttgta 31909174  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttc 181  Q
    ||   ||||| || ||||||||||||  ||| |||||||  ||||||||| ||||||||||| ||||||||    
T  31909173 tcttttcaactatcatcaatacaatagctttgtaagctt--ttctctctattttcatggatg-catgtttc 31909106  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 3788642 - 3788500
Alignment:
Q  44 agggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgtatccct-caacaattatcaatacaataattttc 142  Q
    |||||| |||| || ||||| |||||||||||||||||  | |||||| |  | |||||| | |||||||  | |||| |||||||||||||||||||||    
T  3788642 agggtactagtatagtcactgtataagtcacaagttgacccatttgtatcact-ttttcattcttgtatcatttcaactattatcaatacaataattttc 3788544  T
Q  143 taagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||| ||| |||||||||| ||||||||||| ||||||||||||||    
T  3788543 taaactt-cttctctctattttcatggatgccatgtttctcaaca 3788500  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 12062868 - 12062937
Alignment:
Q  116 tcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||||| || ||||| | |||| |||||||||||||  |||||||| ||||||||||| ||||||||||||||    
T  12062868 tcaaccatcatcaagagaatagttttctaagcttt--tctctctattttcatggatgccatgtttctcaaca 12062937  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 2576975 - 2577148
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||| |||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||| || |||||| |  | |||||| | |||||    
T  2576975 atagatagtgatactcattttagagttagtta-gggtactagtatagtcactatataagtcacaagttgactcatttgtatcact-ttttcattcttgta 2577072  T
Q  112 tccct-caacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||  | |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  2577073 tcatttcaactattatcaatacaataattttctaagctt-cttctctctattttcatggatgccatgtttctcaaca 2577148  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 26389169 - 26389324
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    ||||||||||||||||||||||||||||||| || ||| |||| || ||||||||||||||||||||||| ||||||||| ||                     
T  26389169 ataggtagttatactcattttagagttagtt-agtgtactagtttagtcactatataagtcacaagttgactcttttgtatct----------------- 26389250  T
Q  112 tccctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaacaa 188  Q
      | ||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||||    
T  26389251 --cttcaactattatcaatacaataattttctaag-ttttttctctctattttcatggatgccatgtttctcaacaa 26389324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 1773588 - 1773526
Alignment:
Q  122 attatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaa 185  Q
    |||||||||||||||| ||| |||||||| | ||||||| ||| ||||||||||||||||||||    
T  1773588 attatcaatacaataactttgtaagcttt-tactctctatttttatggatgtcatgtttctcaa 1773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 1715830 - 1715745
Alignment:
Q  59 tcactatataagtcacaagttgattcttttgtaactatcttttcaattttgtatc-cctcaacaattatcaatacaataattttct 143  Q
    ||||||||||||| || |||||| ||||||||| || |||||||| |||| ||||   ||||| |||||||||||||||| |||||    
T  1715830 tcactatataagttactagttgactcttttgtatctctcttttcacttttatatcatttcaactattatcaatacaataactttct 1715745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 1773732 - 1773701
Alignment:
Q  12 ataggtagttatactcattttagagttagtta 43  Q
    ||||||||||||||||||||||||||||||||    
T  1773732 ataggtagttatactcattttagagttagtta 1773701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 33638946 - 33638777
Alignment:
Q  18 agttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgtatccct- 116  Q
    ||||||||| |||||||||||||||| | |||||||| || ||  ||||||||||| ||||||| ||||||||| || |||||| | ||||||||| ||     
T  33638946 agttatacttattttagagttagtta-gtgtattagtttaatcgttatataagtcataagttgactcttttgtatctctcttttaacttttgtatctctt 33638848  T
Q  117 caacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaacaa 188  Q
    |||  |||||||| |||||||||||| ||| ||| ||||||||| ||||||||||| |||||||||||||||    
T  33638847 caattattatcaagacaataattttcaaagtttt-ttctctctattttcatggatgccatgtttctcaacaa 33638777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 21146995 - 21146819
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcacta--tataagtcacaagttgattcttttgtaactatcttttcaattttg 109  Q
    |||| ||||||||||||||||| ||||||||| ||||| |||| |  ||| |   ||||||||||| ||||| || |||||| || |||||||| | |||    
T  21146995 atagatagttatactcattttaaagttagtta-gggtactagttttgtcaatgactataagtcacatgttgactcatttgtacctctcttttcattcttg 21146897  T
Q  110 tatccct-caacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||||  | |||| ||| ||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||||    
T  21146896 tatcatttcaactattttcaatacaataattttctaagtttt-ttctctctattttcatggatgacatgtttcttaaca 21146819  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 4215228 - 4215401
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| ||||||||||||||| ||||||||||| | | | ||||  | |||||||||||||||  |||||| ||||||||| || |||||||| |||| ||    
T  4215228 atagttagttatactcattt-agagttagtta-gtgcactagttgagtcactatataagtcattagttgactcttttgtatctctcttttcacttttata 4215325  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||   ||||| |||||||||||||||| |||||||||||| ||||||| | ||||||||||| ||||||||||||||    
T  4215326 tcatttcaactattatcaatacaataactttctaagcttt-ttctctccattttcatggatgccatgtttctcaaca 4215401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 18587544 - 18587465
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaa-gttgattcttttgta 91  Q
    ||||||||||||||| ||||||||||||||| |||||| ||||    | |||||||||||||||| |||||||| ||||||    
T  18587544 ataggtagttatacttattttagagttagtt-agggtactagttaggttactatataagtcacaaggttgattcatttgta 18587465  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 37498273 - 37498203
Alignment:
Q  116 tcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||||| || |||||||||||||| ||||||| ||| ||||||| | ||||||||||| ||| ||||||||||    
T  37498273 tcaactatcatcaatacaataatcttctaagtttt-ttctctccattttcatggatgccatatttctcaaca 37498203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 20509275 - 20509106
Alignment:
Q  16 gtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgtatccc 115  Q
    |||||||||||||||||||||||||||| ||||| |||| || ||| ||||||||| ||||||||| || ||| || || || ||||| ||||||||       
T  20509275 gtagttatactcattttagagttagttaggggtactagtttagtcaatatataagttacaagttgactcatttatatctctc-tttcatttttgtat-tt 20509178  T
Q  116 tcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaacaa 188  Q
    ||||| | |||| ||| |||||||||| | | ||  ||||||||| |||||||||||||||||||||||||||    
T  20509177 tcaactagtatcgatataataattttcgacg-ttgtttctctctattttcatggatgtcatgtttctcaacaa 20509106  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 26608075 - 26608007
Alignment:
Q  116 tcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaacaa 188  Q
    ||||| || ||||||||||||  ||||||||||||  |||||||| ||||||||||||||||||||| |||||    
T  26608075 tcaactatcatcaatacaata--tttctaagcttt--tctctctattttcatggatgtcatgtttcttaacaa 26608007  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 16385558 - 16385728
Alignment:
Q  12 ataggtagttatactcattttagagttagttaagggtattagtgtattcactatataagtcacaagttgattcttttgtaactatcttttcaattttgta 111  Q
    |||| |||||||||||||||||||||||||| |||||| |||| || ||||| ||||||||||||||||| || ||||||  | || ||||| |||||||    
T  16385558 atagatagttatactcattttagagttagtt-agggtactagtttagtcactgtataagtcacaagttgactcatttgtacatctc-tttcatttttgta 16385655  T
Q  112 tc-cctcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctca 184  Q
    ||   |   | || ||||||||||||| ||| |||||||| |||| |||| ||||||||||| |||||||||||    
T  16385656 tcattttccctataatcaatacaataactttgtaagcttt-ttctttctattttcatggatgccatgtttctca 16385728  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 12685192 - 12685256
Alignment:
Q  122 attatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    |||||||||| ||||| ||||||||| || | ||||||| ||| ||||||| ||||||||||||||    
T  12685192 attatcaatataataactttctaagcctt-tcctctctatttttatggatgccatgtttctcaaca 12685256  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 51306436 - 51306499
Alignment:
Q  122 attatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  51306436 attatcaatacaataattt-ctaagcttt-ttctctctattttcatggatgtcatgtttctcaaca 51306499  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 51308892 - 51308961
Alignment:
Q  116 tcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||||    
T  51308892 tcaactattatcaatacaataattta-taagcttt-ttctctctattttcatggatgtcatgtttctcaaca 51308961  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 20871432 - 20871490
Alignment:
Q  127 caatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    |||||||||| |||||||||||||  |||||||  |||||||||||||||||||| |||||    
T  20871432 caatacaatagttttctaagcttttctctctct--tttcatggatgtcatgtttcccaaca 20871490  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 20868778 - 20868847
Alignment:
Q  116 tcaacaattatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctcaaca 187  Q
    ||||| || |||||||||||| ||||||||||||  ||||||||  ||||||||||| |||||||| |||||    
T  20868778 tcaactatcatcaatacaatagttttctaagctt--ttctctctcttttcatggatgccatgtttcccaaca 20868847  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 46432546 - 46432606
Alignment:
Q  122 attatcaatacaataattttctaagctttcttctctctactttcatggatgtcatgtttctca 184  Q
    |||||||||||||||||||| |||||||| | ||||||| ||||||||||| |||||||||||    
T  46432546 attatcaatacaataattttgtaagcttt-tcctctctattttcatggatg-catgtttctca 46432606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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