View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19680_high_13 (Length: 253)
Name: NF19680_high_13
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 24483002 - 24482808
Alignment:
| Q |
43 |
caatgtaagactctcaacaaaattctcatactcaggactagacatatatgggcggaacttaactcaacttccttgtaacactactacatatataactatc |
142 |
Q |
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| T |
24483002 |
caatgtaagactctcaacaaaattctcatactcaggactagacatatatgggtggaacttaactcaacttccttgtaacactactacatatataactatc |
24482903 |
T |
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| Q |
143 |
agtaacattgaaccggtagtatccatagaaatgttactatttaatatccatagctattggttatgtagtgagaagactaataaatgtagagcaaa |
237 |
Q |
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| T |
24482902 |
aataacattgaaccggtaatatccatagaaatgttactatttaatatccatagctattggttatgtagtcagaagactaataaatgtagagcaaa |
24482808 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 23263803 - 23263863
Alignment:
| Q |
126 |
ctacatatataactatcagtaacattgaaccggtagtatccatagaaatgttactatttaa |
186 |
Q |
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| T |
23263803 |
ctacatatataactattagtaacattgaacaggtaagcttcttagaaatgttactatttaa |
23263863 |
T |
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