View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19680_high_16 (Length: 209)
Name: NF19680_high_16
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 24482984 - 24482808
Alignment:
| Q |
17 |
aaaattctcatactcaggactagacatatatgggcggaacttaactcaacttccttgtaacactactacatatataactatcagtaacattgaaccggta |
116 |
Q |
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| T |
24482984 |
aaaattctcatactcaggactagacatatatgggtggaacttaactcaacttccttgtaacactactacatatataactatcaataacattgaaccggta |
24482885 |
T |
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| Q |
117 |
gtatccatagaaatgttactatttaatatccatagctattggttatgtagtgagaagactaataaatgtagagcaaa |
193 |
Q |
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| T |
24482884 |
atatccatagaaatgttactatttaatatccatagctattggttatgtagtcagaagactaataaatgtagagcaaa |
24482808 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 23263803 - 23263863
Alignment:
| Q |
82 |
ctacatatataactatcagtaacattgaaccggtagtatccatagaaatgttactatttaa |
142 |
Q |
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|||||||||||||||| ||||||||||||| |||| | | ||||||||||||||||||| |
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| T |
23263803 |
ctacatatataactattagtaacattgaacaggtaagcttcttagaaatgttactatttaa |
23263863 |
T |
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