View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19680_high_3 (Length: 469)

Name: NF19680_high_3
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19680_high_3
NF19680_high_3
[»] chr8 (17 HSPs)
chr8 (418-452)||(44012283-44012317)
chr8 (420-452)||(35455479-35455511)
chr8 (422-452)||(4135764-4135794)
chr8 (418-452)||(34865697-34865731)
chr8 (418-452)||(42159184-42159218)
chr8 (419-452)||(8378263-8378296)
chr8 (419-452)||(17911031-17911064)
chr8 (419-452)||(18673442-18673475)
chr8 (419-452)||(20091150-20091183)
chr8 (419-452)||(26746902-26746935)
chr8 (419-452)||(27667542-27667575)
chr8 (419-452)||(30852048-30852081)
chr8 (419-452)||(32629768-32629801)
chr8 (419-452)||(38896633-38896666)
chr8 (419-452)||(42927189-42927222)
chr8 (419-451)||(25838648-25838680)
chr8 (420-452)||(37965011-37965043)
[»] chr4 (21 HSPs)
chr4 (418-452)||(51817118-51817152)
chr4 (419-452)||(17609152-17609185)
chr4 (420-452)||(35877017-35877049)
chr4 (420-452)||(37390570-37390602)
chr4 (419-450)||(3761812-3761843)
chr4 (420-451)||(41855063-41855094)
chr4 (420-454)||(23949709-23949743)
chr4 (418-452)||(37669989-37670023)
chr4 (419-452)||(4294103-4294136)
chr4 (419-452)||(7258083-7258116)
chr4 (419-452)||(22128794-22128827)
chr4 (418-451)||(33501394-33501427)
chr4 (419-452)||(34246829-34246862)
chr4 (419-456)||(36507495-36507532)
chr4 (419-452)||(39915844-39915877)
chr4 (419-452)||(42507710-42507743)
chr4 (419-452)||(48380647-48380680)
chr4 (419-452)||(50690592-50690625)
chr4 (419-452)||(51779607-51779640)
chr4 (419-452)||(54270843-54270876)
chr4 (420-452)||(43587740-43587772)
[»] chr3 (19 HSPs)
chr3 (418-452)||(38999517-38999551)
chr3 (419-452)||(48910514-48910547)
chr3 (418-452)||(8176430-8176464)
chr3 (418-452)||(47241235-47241269)
chr3 (418-448)||(50106232-50106262)
chr3 (419-452)||(2929864-2929897)
chr3 (419-452)||(5137646-5137679)
chr3 (419-452)||(8104304-8104337)
chr3 (419-452)||(9794546-9794579)
chr3 (419-452)||(24978903-24978936)
chr3 (419-452)||(28227045-28227078)
chr3 (419-452)||(28686337-28686370)
chr3 (419-452)||(32078093-32078126)
chr3 (419-452)||(32100256-32100289)
chr3 (419-452)||(39144581-39144614)
chr3 (419-452)||(47915996-47916029)
chr3 (419-452)||(51166457-51166490)
chr3 (419-452)||(54747882-54747915)
chr3 (419-451)||(52262298-52262330)
[»] chr1 (20 HSPs)
chr1 (418-452)||(50942694-50942728)
chr1 (419-452)||(8462455-8462488)
chr1 (419-452)||(41529183-41529216)
chr1 (419-452)||(42334432-42334465)
chr1 (418-452)||(11353633-11353667)
chr1 (418-452)||(14203005-14203039)
chr1 (418-452)||(25792229-25792263)
chr1 (418-452)||(40132300-40132334)
chr1 (419-452)||(8712052-8712085)
chr1 (419-452)||(8768623-8768656)
chr1 (419-452)||(13985444-13985477)
chr1 (419-452)||(25984449-25984482)
chr1 (419-452)||(34967505-34967538)
chr1 (418-451)||(35150190-35150223)
chr1 (419-452)||(39501757-39501790)
chr1 (419-452)||(39640342-39640375)
chr1 (419-452)||(41457878-41457911)
chr1 (419-452)||(47038486-47038519)
chr1 (419-452)||(47393556-47393589)
chr1 (420-452)||(26333458-26333490)
[»] chr7 (12 HSPs)
chr7 (419-452)||(3264418-3264451)
chr7 (418-452)||(10200482-10200516)
chr7 (418-452)||(22624387-22624421)
chr7 (419-452)||(1643680-1643713)
chr7 (419-452)||(6696795-6696828)
chr7 (418-451)||(14314641-14314674)
chr7 (419-452)||(24685602-24685635)
chr7 (419-452)||(24924346-24924379)
chr7 (419-452)||(28234315-28234348)
chr7 (419-451)||(3945205-3945237)
chr7 (419-451)||(5680377-5680409)
chr7 (419-451)||(5705429-5705461)
[»] chr6 (7 HSPs)
chr6 (419-452)||(3787166-3787199)
chr6 (418-452)||(8493572-8493606)
chr6 (418-452)||(14310941-14310975)
chr6 (419-452)||(1114488-1114521)
chr6 (419-452)||(2010243-2010276)
chr6 (419-452)||(10364644-10364677)
chr6 (419-452)||(27080508-27080541)
[»] chr2 (18 HSPs)
chr2 (419-452)||(36443587-36443620)
chr2 (419-452)||(39293420-39293453)
chr2 (418-452)||(12123043-12123077)
chr2 (418-452)||(36068177-36068211)
chr2 (419-452)||(1684311-1684344)
chr2 (419-452)||(5669181-5669214)
chr2 (419-452)||(8341655-8341688)
chr2 (419-452)||(12467703-12467736)
chr2 (419-452)||(13196436-13196469)
chr2 (419-452)||(14943438-14943471)
chr2 (419-452)||(16062602-16062635)
chr2 (419-452)||(22050642-22050675)
chr2 (419-452)||(25899074-25899107)
chr2 (419-452)||(27244960-27244993)
chr2 (419-452)||(40833542-40833575)
chr2 (419-452)||(44710008-44710041)
chr2 (419-451)||(3628561-3628593)
chr2 (419-451)||(34213201-34213233)
[»] scaffold0154 (1 HSPs)
scaffold0154 (418-452)||(4154-4188)
[»] chr5 (13 HSPs)
chr5 (418-452)||(39895974-39896008)
chr5 (418-452)||(39990375-39990409)
chr5 (419-452)||(12503919-12503952)
chr5 (419-452)||(15268448-15268481)
chr5 (419-452)||(21582692-21582725)
chr5 (419-452)||(21772822-21772855)
chr5 (419-452)||(25784705-25784738)
chr5 (419-452)||(29816278-29816311)
chr5 (419-452)||(36487357-36487390)
chr5 (419-452)||(40555143-40555176)
chr5 (419-451)||(5288920-5288952)
chr5 (420-452)||(6923088-6923120)
chr5 (420-452)||(40915588-40915620)
[»] scaffold0160 (1 HSPs)
scaffold0160 (419-452)||(25935-25968)
[»] scaffold0057 (1 HSPs)
scaffold0057 (418-451)||(39837-39870)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 44012283 - 44012317
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||||||    
T  44012283 tcaatgaaacattaatgttattttttctattatat 44012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 35455479 - 35455511
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||||    
T  35455479 aatgaaacattaatgttattttttctattatat 35455511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 452
Target Start/End: Original strand, 4135764 - 4135794
Alignment:
Q  422 tgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||    
T  4135764 tgaaacattaatgttattttttctattatat 4135794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 34865697 - 34865731
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||| ||||||||||||||||||||||||||    
T  34865697 tcaatgaatcattaatgttattttttctattatat 34865731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 42159218 - 42159184
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||| |||||||||||||||||||||||||||||    
T  42159218 tcaataaaacattaatgttattttttctattatat 42159184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 8378296 - 8378263
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  8378296 caatgaaacattaatgttatttttcctattatat 8378263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 17911031 - 17911064
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  17911031 caatgaaacattaatgttaatttttctattatat 17911064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 18673442 - 18673475
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  18673442 caatgaaacattaatgttactttttctattatat 18673475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 20091183 - 20091150
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  20091183 caatgaaacattaatgttatttttcctattatat 20091150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 26746902 - 26746935
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||| ||||||||||||||||||    
T  26746902 caatgaaacattaatattattttttctattatat 26746935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 27667542 - 27667575
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  27667542 caatgaaacattaatgttatttttcctattatat 27667575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 30852048 - 30852081
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  30852048 caatgaaacattaatgttatttttcctattatat 30852081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 32629801 - 32629768
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||| |||||||||||||||||||||||||||||    
T  32629801 caataaaacattaatgttattttttctattatat 32629768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 38896666 - 38896633
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  38896666 caatgaaacattaatgttatttttcctattatat 38896633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 42927189 - 42927222
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  42927189 caatgaaacattaatgttatttttcctattatat 42927222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 25838680 - 25838648
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    |||||||||||||||||||||||| ||||||||    
T  25838680 caatgaaacattaatgttatttttcctattata 25838648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 37965043 - 37965011
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||| ||||||||||||||    
T  37965043 aatgaaacattaatgttactttttctattatat 37965011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 51817152 - 51817118
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||||||    
T  51817152 tcaatgaaacattaatgttattttttctattatat 51817118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 17609185 - 17609152
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  17609185 caatgaaacattaatgttattttttctattatat 17609152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 35877049 - 35877017
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||||    
T  35877049 aatgaaacattaatgttattttttctattatat 35877017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 37390570 - 37390602
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||||    
T  37390570 aatgaaacattaatgttattttttctattatat 37390602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Original strand, 3761812 - 3761843
Alignment:
Q  419 caatgaaacattaatgttattttttctattat 450  Q
    ||||||||||||||||||||||||||||||||    
T  3761812 caatgaaacattaatgttattttttctattat 3761843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Original strand, 41855063 - 41855094
Alignment:
Q  420 aatgaaacattaatgttattttttctattata 451  Q
    ||||||||||||||||||||||||||||||||    
T  41855063 aatgaaacattaatgttattttttctattata 41855094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 454
Target Start/End: Complemental strand, 23949743 - 23949709
Alignment:
Q  420 aatgaaacattaatgttattttttctattatatat 454  Q
    |||| ||||||||||||||||||||||||||||||    
T  23949743 aatgcaacattaatgttattttttctattatatat 23949709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 37669989 - 37670023
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  37669989 tcaatgaaacattaatgttatttttcctattatat 37670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 4294136 - 4294103
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  4294136 caatgaaacattaatgttatttttcctattatat 4294103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 7258116 - 7258083
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  7258116 caatgaaacattaatgttactttttctattatat 7258083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 22128794 - 22128827
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||| |||||||||||||    
T  22128794 caatgaaacattaatgttatcttttctattatat 22128827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 33501394 - 33501427
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattata 451  Q
    |||||||||||||||||||| |||||||||||||    
T  33501394 tcaatgaaacattaatgttactttttctattata 33501427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 34246829 - 34246862
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||| ||||    
T  34246829 caatgaaacattaatgttattttttctataatat 34246862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 36507532 - 36507495
Alignment:
Q  419 caatgaaacattaatgttattttttctattatatattt 456  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  36507532 caatgaaacattaattttatttttcctattatatattt 36507495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 39915844 - 39915877
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  39915844 caatgaaacattaatgttatttttcctattatat 39915877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 42507743 - 42507710
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  42507743 caatgaaacattaatgttactttttctattatat 42507710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 48380647 - 48380680
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  48380647 caatgaaacattaatgttatttttcctattatat 48380680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 50690625 - 50690592
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  50690625 caatgaaacattaatgttatttttcctattatat 50690592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 51779607 - 51779640
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  51779607 caatgaaacattaatgttactttttctattatat 51779640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 54270843 - 54270876
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  54270843 caatgaaatattaatgttattttttctattatat 54270876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 43587740 - 43587772
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||| |||||||||    
T  43587740 aatgaaacattaatgttatttttcctattatat 43587772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 38999517 - 38999551
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||||||    
T  38999517 tcaatgaaacattaatgttattttttctattatat 38999551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 48910547 - 48910514
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  48910547 caatgaaacattaatgttattttttctattatat 48910514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 8176430 - 8176464
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||| ||||||||||||||||||    
T  8176430 tcaatgaaacattaattttattttttctattatat 8176464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 47241235 - 47241269
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  47241235 tcaatgaaacattaatgttatttttcctattatat 47241269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 50106262 - 50106232
Alignment:
Q  418 tcaatgaaacattaatgttattttttctatt 448  Q
    |||||||||||||||||||||||||||||||    
T  50106262 tcaatgaaacattaatgttattttttctatt 50106232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 2929897 - 2929864
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  2929897 caatgaaacattaatgttatttttcctattatat 2929864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 5137679 - 5137646
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  5137679 caatgaaacattaatgttatttttcctattatat 5137646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 8104304 - 8104337
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  8104304 caatgaaacattaatgttatttttcctattatat 8104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 9794546 - 9794579
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  9794546 caatgaaatattaatgttattttttctattatat 9794579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 24978903 - 24978936
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  24978903 caatgaaacattaatgttatttttcctattatat 24978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 28227045 - 28227078
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  28227045 caatgaaacattaatgttatttttcctattatat 28227078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 28686370 - 28686337
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  28686370 caatgaaacattaatgttactttttctattatat 28686337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 32078093 - 32078126
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  32078093 caatgaaacattaatgttatttttcctattatat 32078126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 32100289 - 32100256
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  32100289 caatgaaacattaatgttatttttcctattatat 32100256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 39144614 - 39144581
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  39144614 caatgaaacattaatgttatttttcctattatat 39144581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 47916029 - 47915996
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  47916029 caatgaaatattaatgttattttttctattatat 47915996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 51166490 - 51166457
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  51166490 caatgaaacattaatgttatttttcctattatat 51166457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 54747915 - 54747882
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  54747915 caatgaaaaattaatgttattttttctattatat 54747882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 52262298 - 52262330
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    ||||||||||||||||||| |||||||||||||    
T  52262298 caatgaaacattaatgttactttttctattata 52262330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 50942694 - 50942728
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||||||||||||||    
T  50942694 tcaatgaaacattaatgttattttttctattatat 50942728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 8462488 - 8462455
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  8462488 caatgaaacattaatgttattttttctattatat 8462455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 41529183 - 41529216
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  41529183 caatgaaacattaatgttattttttctattatat 41529216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 42334465 - 42334432
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  42334465 caatgaaacattaatgttattttttctattatat 42334432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 11353633 - 11353667
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||| ||||||||||||||    
T  11353633 tcaatgaaacattaatgttactttttctattatat 11353667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 14203005 - 14203039
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  14203005 tcaatgaaacattaatgttatttttcctattatat 14203039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 25792229 - 25792263
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  25792229 tcaatgaaacattaatgttatttttcctattatat 25792263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 40132300 - 40132334
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  40132300 tcaatgaaacattaatgttatttttcctattatat 40132334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 8712085 - 8712052
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  8712085 caatgaaacattaatgttactttttctattatat 8712052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 8768656 - 8768623
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  8768656 caatgaaatattaatgttattttttctattatat 8768623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 13985477 - 13985444
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  13985477 caatgaaacattaatgttatttttcctattatat 13985444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 25984449 - 25984482
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  25984449 caatgaaacattaatgttatttttcctattatat 25984482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 34967538 - 34967505
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  34967538 caatgaaaaattaatgttattttttctattatat 34967505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 35150223 - 35150190
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattata 451  Q
    |||||||||| |||||||||||||||||||||||    
T  35150223 tcaatgaaactttaatgttattttttctattata 35150190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 39501757 - 39501790
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  39501757 caatgaaatattaatgttattttttctattatat 39501790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 39640342 - 39640375
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  39640342 caatgaaatattaatgttattttttctattatat 39640375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 41457911 - 41457878
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  41457911 caatgaaatattaatgttattttttctattatat 41457878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 47038519 - 47038486
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  47038519 caatgaaacattaatgttatttttcctattatat 47038486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 47393589 - 47393556
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  47393589 caatgaaacattaatgttactttttctattatat 47393556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 26333490 - 26333458
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||| |||||||||    
T  26333490 aatgaaacattaatgttatttttcctattatat 26333458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 3264418 - 3264451
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  3264418 caatgaaacattaatgttattttttctattatat 3264451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 10200516 - 10200482
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  10200516 tcaatgaaacattaatgttatttttcctattatat 10200482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 22624387 - 22624421
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||| ||||||||||||||    
T  22624387 tcaatgaaacattaatgttactttttctattatat 22624421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 1643713 - 1643680
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  1643713 caatgaaacattaatgttatttttcctattatat 1643680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 6696828 - 6696795
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| ||||||||    
T  6696828 caatgaaacattaatgttattttttttattatat 6696795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 14314641 - 14314674
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattata 451  Q
    ||||||||| ||||||||||||||||||||||||    
T  14314641 tcaatgaaatattaatgttattttttctattata 14314674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 24685635 - 24685602
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  24685635 caatgaaacattaatgttatttttcctattatat 24685602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 24924379 - 24924346
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  24924379 caatgaaaaattaatgttattttttctattatat 24924346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 28234348 - 28234315
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  28234348 caatgaaacattaatgttatttttcctattatat 28234315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 3945205 - 3945237
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    ||||| |||||||||||||||||||||||||||    
T  3945205 caatgcaacattaatgttattttttctattata 3945237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 5680409 - 5680377
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    |||||||||||||||||||||||| ||||||||    
T  5680409 caatgaaacattaatgttatttttcctattata 5680377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 5705461 - 5705429
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    |||||||||||||||||||||||| ||||||||    
T  5705461 caatgaaacattaatgttatttttcctattata 5705429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 3787166 - 3787199
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  3787166 caatgaaacattaatgttattttttctattatat 3787199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 8493606 - 8493572
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  8493606 tcaatgaaacattaatgttatttttcctattatat 8493572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 14310975 - 14310941
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  14310975 tcaatgaaacattaatgttatttttcctattatat 14310941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 1114521 - 1114488
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  1114521 caatgaaacattaatgttatttttcctattatat 1114488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 2010276 - 2010243
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  2010276 caatgaaacattaatgttatttttcctattatat 2010243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 10364677 - 10364644
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  10364677 caatgaaacattaatgttactttttctattatat 10364644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 27080541 - 27080508
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  27080541 caatgaaacattaatgttatttttcctattatat 27080508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 36443587 - 36443620
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  36443587 caatgaaacattaatgttattttttctattatat 36443620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 39293420 - 39293453
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||||||||||||    
T  39293420 caatgaaacattaatgttattttttctattatat 39293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 12123077 - 12123043
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||| |||||||||||||||||||||||||||||    
T  12123077 tcaataaaacattaatgttattttttctattatat 12123043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 36068177 - 36068211
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  36068177 tcaatgaaacattaatgttatttttcctattatat 36068211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 1684344 - 1684311
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  1684344 caatgaaacattaatgttactttttctattatat 1684311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 5669214 - 5669181
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  5669214 caatgaaacattaatgttatttttcctattatat 5669181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 8341688 - 8341655
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  8341688 caatgaaacattaatgttactttttctattatat 8341655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 12467703 - 12467736
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||| |||||||||||||||||    
T  12467703 caatgaaacattaatgctattttttctattatat 12467736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 13196436 - 13196469
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||| ||||||||||||||||||    
T  13196436 caatgaaacattaatattattttttctattatat 13196469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 14943471 - 14943438
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  14943471 caatgaaacattaatgttatttttcctattatat 14943438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 16062602 - 16062635
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  16062602 caatgaaacattaatgttatttttcctattatat 16062635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 22050675 - 22050642
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  22050675 caatgaaatattaatgttattttttctattatat 22050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 25899074 - 25899107
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  25899074 caatgaaacattaatgttactttttctattatat 25899107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 27244960 - 27244993
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  27244960 caatgaaacattaatgttatttttcctattatat 27244993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 40833542 - 40833575
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||| ||||||||||||||    
T  40833542 caatgaaacattaatgttactttttctattatat 40833575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 44710041 - 44710008
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  44710041 caatgaaatattaatgttattttttctattatat 44710008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Complemental strand, 3628593 - 3628561
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    |||||||||||||||||||||||| ||||||||    
T  3628593 caatgaaacattaatgttatttttcctattata 3628561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 34213201 - 34213233
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    |||||||||||||||||||||||| ||||||||    
T  34213201 caatgaaacattaatgttatttttcctattata 34213233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 4188 - 4154
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||| ||||||||||||||    
T  4188 tcaatgaaacattaatgttactttttctattatat 4154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 39896008 - 39895974
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||| ||||||||||||||||||||    
T  39896008 tcaatgaaacattactgttattttttctattatat 39895974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 39990409 - 39990375
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||||| |||||||||    
T  39990409 tcaatgaaacattaatgttatttttcctattatat 39990375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 12503919 - 12503952
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  12503919 caatgaaacattaatgttatttttcctattatat 12503952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 15268481 - 15268448
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||| |||||||||||||||    
T  15268481 caatgaaacattaatgttgttttttctattatat 15268448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 21582725 - 21582692
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  21582725 caatgaaatattaatgttattttttctattatat 21582692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 21772855 - 21772822
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  21772855 caatgaaacattaatgttatttttcctattatat 21772822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 25784738 - 25784705
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  25784738 caatgaaacattaatgttatttttcctattatat 25784705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 29816278 - 29816311
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  29816278 caatgaaacattaatgttatttttcctattatat 29816311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 36487357 - 36487390
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    ||||||| ||||||||||||||||||||||||||    
T  36487357 caatgaagcattaatgttattttttctattatat 36487390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Original strand, 40555143 - 40555176
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||| |||||||||||||||||||||||||    
T  40555143 caatgaaatattaatgttattttttctattatat 40555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 5288920 - 5288952
Alignment:
Q  419 caatgaaacattaatgttattttttctattata 451  Q
    ||||| |||||||||||||||||||||||||||    
T  5288920 caatgcaacattaatgttattttttctattata 5288952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 6923088 - 6923120
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    ||||||||||||||||||||||| |||||||||    
T  6923088 aatgaaacattaatgttatttttcctattatat 6923120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 40915620 - 40915588
Alignment:
Q  420 aatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||| ||||||||||||||    
T  40915620 aatgaaacattaatgttactttttctattatat 40915588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 25968 - 25935
Alignment:
Q  419 caatgaaacattaatgttattttttctattatat 452  Q
    |||||||||||||||||||||||| |||||||||    
T  25968 caatgaaacattaatgttatttttcctattatat 25935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 39837 - 39870
Alignment:
Q  418 tcaatgaaacattaatgttattttttctattata 451  Q
    |||||||||||||||||||||||||||| |||||    
T  39837 tcaatgaaacattaatgttattttttctgttata 39870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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