View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19680_low_1 (Length: 550)

Name: NF19680_low_1
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19680_low_1
NF19680_low_1
[»] chr8 (3 HSPs)
chr8 (18-251)||(9490813-9491048)
chr8 (380-540)||(9492146-9492306)
chr8 (248-318)||(9492008-9492078)
[»] scaffold0048 (3 HSPs)
scaffold0048 (380-540)||(64262-64422)
scaffold0048 (457-540)||(50967-51050)
scaffold0048 (380-434)||(51047-51101)
[»] chr4 (3 HSPs)
chr4 (380-540)||(42272406-42272566)
chr4 (380-540)||(40483631-40483790)
chr4 (380-442)||(55899828-55899890)
[»] chr2 (1 HSPs)
chr2 (380-540)||(8384275-8384435)
[»] chr1 (3 HSPs)
chr1 (380-537)||(19015187-19015343)
chr1 (441-540)||(36379581-36379681)
chr1 (380-490)||(4939212-4939321)
[»] scaffold0246 (1 HSPs)
scaffold0246 (380-540)||(21570-21729)
[»] chr7 (1 HSPs)
chr7 (388-540)||(44846290-44846443)
[»] chr3 (1 HSPs)
chr3 (380-540)||(15792633-15792790)
[»] chr5 (1 HSPs)
chr5 (426-484)||(40168164-40168222)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 9490813 - 9491048
Alignment:
Q  18 catccttgaaaactcagaattctagaagcactgacagataggcacaacattgttggtagcatcgagggacacattcaaattagacaagttccacctccca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9490813 catccttgaaaactcagaattctagaagcactgacagataggcacaacattgttggtagcatcgagggacacattcaaattagacaagttccacctccca 9490912  T
Q  118 ttttggattcagttgcataacaaactgaatatatcagaagcaaactcatgagt--aaagagtgtataactttgaagagacattataaatagaggatcttc 215  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  9490913 ttttggattcagttgcataacaaactgaatatatccgaagcaaactaatgagtaaaaagagcgtataactttgaagagacattataaatagaggatcttc 9491012  T
Q  216 tcctcatgtatgatcatgatattttttactcatttt 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  9491013 tcctcatgtatgatcatgatattttttactcatttt 9491048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 380 - 540
Target Start/End: Original strand, 9492146 - 9492306
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9492146 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 9492245  T
Q  480 tatacaagatacaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    ||||||||||||||||| |||||||||  || |||||||||||||||||||||||||||||    
T  9492246 tatacaagatacaacattagtcaagactcaaacaaactaaagggtccgaccaccatctctg 9492306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 9492008 - 9492078
Alignment:
Q  248 ttttttatccactatcacacctttgacatcggagtatcttttacatgtacaacgcacaccccttcaagttc 318  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9492008 ttttctatccactatcacacctttgacatcggagtatcttttacatgtacaacacacaccccttcaagttc 9492078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 380 - 540
Target Start/End: Complemental strand, 64422 - 64262
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| |||||||||  |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  64422 aagaaatcaaaatggattatattaataatggcgatgagaattccctagtacaagatgtaccaaagagaccacctcaaaagacaaaccgtcttacaaagta 64323  T
Q  480 tatacaagatacaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    | |||||||||||||||||||||||||| || |||| |||||| |||||||| ||||||||    
T  64322 tttacaagatacaacatcagtcaagacccaaacaaagtaaaggatccgaccatcatctctg 64262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 457 - 540
Target Start/End: Complemental strand, 51050 - 50967
Alignment:
Q  457 aagacaaaccgtcttacaaagtatatacaagatacaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  |||||| |||||||||||||||||    
T  51050 aagacaaaccgtcttacaaagtatttacaagatacaacatcagtcaagacccaagcaatgtaaaggatccgaccaccatctctg 50967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 51101 - 51047
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaaga 434  Q
    ||||| |||||||||  |||||||| |||||||| ||||||||||||||| ||||    
T  51101 aagaaatcaaaatggattatattaataatggcgatgagaactccctagtataaga 51047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 380 - 540
Target Start/End: Original strand, 42272406 - 42272566
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| ||||||||  ||||||||| |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  42272406 aagaaatcaaaatgaaatatattaacaatggcggtgagagctccctagtacaagatgtaccaaagagaccaccccaaaagacaaagcgtcatacaaagta 42272505  T
Q  480 tatacaagatacaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    ||||||| ||  || |||| |||||||| || || ||||| ||||||||||||||||||||    
T  42272506 tatacaaaatgaaagatcaatcaagacccaaacatactaaggggtccgaccaccatctctg 42272566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 380 - 540
Target Start/End: Original strand, 40483631 - 40483790
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| |||||||| |||||||||| |||||||| || ||||| |||||||||| ||||| |  ||| |||||||||||||||| |||||||||||||||    
T  40483631 aagaaatcaaaatgtgatatattaacaatggcgatga-aactctctagtacaagttgtactacggag-ccaccccaaaagacaacccgtcttacaaagta 40483728  T
Q  480 tatacaagat-acaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    | |||||||| | ||  |||||||||||| || || | ||| ||||||||||||||||||||    
T  40483729 tttacaagataataatgtcagtcaagacccaaacacaataaggggtccgaccaccatctctg 40483790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 55899828 - 55899890
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaa 442  Q
    ||||| |||||| |||||||||||| |||||||  |||| |||||||||||||||||||||||    
T  55899828 aagaaatcaaaacgggatatattaacaatggcggtgagagctccctagtacaagatgtaccaa 55899890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 380 - 540
Target Start/End: Original strand, 8384275 - 8384435
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| ||||||||||||||||||| |||||||| | || |||||||||| ||||||||||||||||| |||||  ||||||||||| ||||||||||||    
T  8384275 aagaaatcaaaatgggatatattaacaatggcgatgcgagctccctagtataagatgtaccaaagagatcacccttaaagacaaaccatcttacaaagta 8384374  T
Q  480 tatacaagat-acaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    |||||||||| | || |||||||||||||||| || | | ||||||||||||||||||||||    
T  8384375 tatacaagataaaaagatcagtcaagacctaaacataat-aagggtccgaccaccatctctg 8384435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 380 - 537
Target Start/End: Complemental strand, 19015343 - 19015187
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| |||||||| |||||||||| |||||||  |||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  19015343 aagaaatcaaaatgagatatattaataatggcggtgagagctccctagtacaagatgtatcaaagagaccactccaaaagacaaaccgtcttacaaagta 19015244  T
Q  480 tatacaagatacaacatcagtcaagacctaagcaaactaaagggtccgaccaccatct 537  Q
    ||||||| | | || ||||||| ||||| || || | ||| |||| ||||||||||||    
T  19015243 tatacaata-aaaagatcagtctagacccaaacatattaaggggttcgaccaccatct 19015187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 540
Target Start/End: Original strand, 36379581 - 36379681
Alignment:
Q  441 aaagagaccaccccaaaagacaaaccgtcttacaaagtatatacaagat-acaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctct 539  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||| ||  | | |||  | ||||||||||||||||    
T  36379581 aaagaggccaccccaaaagacaaaccgtcttacaaagtatacacaagataaaaagatcagtcaagacccaaatacaataagagatccgaccaccatctct 36379680  T
Q  540 g 540  Q
    |    
T  36379681 g 36379681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 490
Target Start/End: Original strand, 4939212 - 4939321
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| |||||||| |||||||||| |||||||| |||| |||||||||||||| ||||  | |||| ||| |||||||| ||| | |||||||||||||    
T  4939212 aagaaatcaaaatgagatatattaacaatggcgatgagagctccctagtacaagttgtattagagaggccatcccaaaag-caagctgtcttacaaagta 4939310  T
Q  480 tatacaagata 490  Q
    | || ||||||    
T  4939311 tgtataagata 4939321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 380 - 540
Target Start/End: Original strand, 21570 - 21729
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| |||||||| |||||||||| |||||||| || ||||| |||||||||| ||||| |  ||| |||||||||||||||| |||||||||||||||    
T  21570 aagaaatcaaaatgtgatatattaacaatggcgatga-aactctctagtacaagttgtactacggag-ccaccccaaaagacaacccgtcttacaaagta 21667  T
Q  480 tatacaagat-acaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    | |||||||| | ||  |||||||||||| || || | ||| ||||||||||||||||||||    
T  21668 tttacaagataataatgtcagtcaagacccaaacacaataaggggtccgaccaccatctctg 21729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 388 - 540
Target Start/End: Complemental strand, 44846443 - 44846290
Alignment:
Q  388 aaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagtatatacaag 487  Q
    ||||||||||||||||| |||| ||| || |||||| ||||| ||| |||| ||||||| ||| |||||||||||| |||||||||||||||| ||||||    
T  44846443 aaaatgggatatattaacaatgacgatgaaaactccatagtataagttgtatcaaagaggccatcccaaaagacaatccgtcttacaaagtatttacaag 44846344  T
Q  488 at-acaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    || | ||  |||||||||||| || || | ||| |||||| |||| ||||||||    
T  44846343 ataataaggtcagtcaagacccaaacacaataaggggtccaaccatcatctctg 44846290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 380 - 540
Target Start/End: Original strand, 15792633 - 15792790
Alignment:
Q  380 aagaattcaaaatgggatatattaagaatggcgaagagaactccctagtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagta 479  Q
    ||||| ||||||||| |||||||||  |||| |  ||||  | || |||||||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  15792633 aagaactcaaaatggaatatattaactatggtggtgagattttccgagtacaagatgtaccaaagagaccaccccaaaagacaa-ccgtcttacagtgta 15792731  T
Q  480 tatacaagatacaacatcagtcaagacctaagcaaactaaagggtccgaccaccatctctg 540  Q
    ||||||| | |  | || |||||||||| || |||||||| |||||| |||||||||||||    
T  15792732 tatacaaaaaa--agattagtcaagacccaaacaaactaaggggtccaaccaccatctctg 15792790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 484
Target Start/End: Complemental strand, 40168222 - 40168164
Alignment:
Q  426 agtacaagatgtaccaaagagaccaccccaaaagacaaaccgtcttacaaagtatatac 484  Q
    |||||||||||||||||| ||||||| |||||| |||||  ||| || |||||||||||    
T  40168222 agtacaagatgtaccaaaaagaccactccaaaaaacaaagtgtcatataaagtatatac 40168164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University