View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19680_low_10 (Length: 287)
Name: NF19680_low_10
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 7768571 - 7768840
Alignment:
| Q |
1 |
tgttttatcttaaacaaacaacaatgtgatggttgatttggcatctgcatcaacctttgagaaggactttaacctgttctaaggttttcatatttaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7768571 |
tgttttatcttaaacaaacaacaatgtgatggttgatttggcatctgcatcaacctttgagaaggactttaacctgttctaaggttttcatatttaatag |
7768670 |
T |
|
| Q |
101 |
ttattttggtaaatgttgcaggcaaaacaaagccttgagtcatttcgaagatgatgtggatgagttgaatttcagattgaaaggtgctaatcgacgtgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7768671 |
ttattttggtaaatgttgcaggcaaaacaaagccttgagtcatttcgaagatgatgtggatgagttgaatttcagattgaaaggtgctaatcgacgtgct |
7768770 |
T |
|
| Q |
201 |
aatcgtttacttggaaattaagattgattttttcaacttttaatcattgtttttccatactgtaattgat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7768771 |
aatcgtttacttggaaattaagattgattttttcaacttttaatcattgtttttccatactgtaattgat |
7768840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 101 - 266
Target Start/End: Complemental strand, 45391387 - 45391224
Alignment:
| Q |
101 |
ttattttggtaaatgttgcaggcaaaacaaagccttgagtcatttcgaagatgatgtggatgagttgaatttcagattgaaaggtgctaatcgacgtgct |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||| || ||||||| ||||||| |||||| |
|
|
| T |
45391387 |
ttattttggtaaatgttgcaggcataacaaagccttgggtcatttagatgatgatgtggatgagttgaatttccgagtgaaaggcgctaatcagcgtgct |
45391288 |
T |
|
| Q |
201 |
aatcgtttacttggaaattaagattgattttttcaacttttaatcattgtttttccatactgtaat |
266 |
Q |
| |
|
|||| || | ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391287 |
cgtcgtctaatgggaaaataagactga--ttttcaacttttaatcattgtttttccatactgtaat |
45391224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 45391448 - 45391394
Alignment:
| Q |
1 |
tgttttatcttaaacaaacaacaatgtgatggttgatttggcatctgcatcaacc |
55 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
45391448 |
tgtttaatcttaaacaaataacaaagtgatggtcgatttggcatctgtatcaacc |
45391394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University