View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19680_low_12 (Length: 258)
Name: NF19680_low_12
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 38227714 - 38227477
Alignment:
| Q |
8 |
tgagaagaagatcatatggcgtttttcttattctgttgctcataatcataatgatgtggtaaaacagaagaaacactcatgtgatgtttgcaacaaggtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38227714 |
tgagaagaagatcatatggcgtttttcttattctgttgctcataatcataatgatgtggtaaaacagaagaaacactcatgtgatgtttgcaacaaggtt |
38227615 |
T |
|
| Q |
108 |
tttacttctaacaaagcattgaatggacatatgagatgtcactatcgtcaaaacggtccaacagttgcagcaccgtctttcgagaaacaacag---tgca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
38227614 |
tttacttctaacaaagcattgaatggacatatgagatgtcactgtcgtcaaaacggtccaacagttgcagcaccctctttcgagaaacaacagccatgca |
38227515 |
T |
|
| Q |
205 |
ggagaagaagatatatgaatattgacgacggcgatgat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38227514 |
ggagaagaagatatatgaatattgacgacgacgatgat |
38227477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 27782761 - 27782690
Alignment:
| Q |
79 |
aacactcatgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatgtcact |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27782761 |
aacactcatgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgatatgtcact |
27782690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 27777200 - 27777271
Alignment:
| Q |
79 |
aacactcatgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatgtcact |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27777200 |
aacactcatgtgatgtttgcaacaaggttttaacttctaacaaagcattgaatggacatatgatatgtcact |
27777271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 27780613 - 27780685
Alignment:
| Q |
78 |
aaacactcatgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatgtcact |
150 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
27780613 |
aaacactcgtgtgatgtttgcaacaaggtttttacttctaacaaagctttgaatggacatatgatatgtcact |
27780685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 21900067 - 21900007
Alignment:
| Q |
85 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
145 |
Q |
| |
|
||||||||||||| |||||||||||| | || ||||| || ||||| || ||||||||||| |
|
|
| T |
21900067 |
catgtgatgtttgtaacaaggttttttcgtccaacaatgctttgaacgggcatatgagatg |
21900007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 35250721 - 35250597
Alignment:
| Q |
29 |
tttttcttattctgttgct---cataatcataatgatgtggtaaaacagaagaaacactcatgtgatgtttgcaacaaggtttttacttctaacaaagca |
125 |
Q |
| |
|
|||||||||||||||| || |||||| | ||| |||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35250721 |
tttttcttattctgttcctactcataataacaattatgttggaaaacaaaataaacactcatgtgatgtttgcaacaaggtttttacttctaacaaagca |
35250622 |
T |
|
| Q |
126 |
ttgaatggacatatgagatgtcact |
150 |
Q |
| |
|
||| ||| ||||| ||| ||||||| |
|
|
| T |
35250621 |
ttggatgaacataagaggtgtcact |
35250597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 441576 - 441432
Alignment:
| Q |
11 |
gaagaagatcatatggcgtttttcttattctgttgctcataatcataatgatgtggtaaaacagaagaaaca------ctcatgtgatgtttgcaacaag |
104 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| | ||||||||| ||||| | ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
441576 |
gaagaagatcgtatggtttttttcttattctgttcttggtaatcataaggatgttgaaaaacagaacaaacatacatactcatgtgatgtttgcaacaag |
441477 |
T |
|
| Q |
105 |
gtttttacttctaacaaagcattgaatggacatatgagatgtcac |
149 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| || ||||||| |
|
|
| T |
441476 |
gtttttacttctaacaaagcattgcatagacataagatatgtcac |
441432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University