View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19680_low_14 (Length: 246)
Name: NF19680_low_14
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 375167 - 374981
Alignment:
| Q |
46 |
gaaaataacaatactacaagttaacaatgtctgtaataatgattctaaaacacagtaaacggtcaaagttttccattctaacatacaacctaagaagatg |
145 |
Q |
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| T |
375167 |
gaaaataacaacactacaaattaacaatgtcagtaataatgattctaaaacacagtaattggtccaagttttccattctaacatacaaccttataagata |
375068 |
T |
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| Q |
146 |
gacaaatgggtccatgactaataaaattcacgtcatcaactccaaaggttaattaaaagtaccagtattgtcaaatagcaactatag |
232 |
Q |
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| T |
375067 |
gacagatgggtccaaggctaacaaaattcacgtcatcaactccaaacgttaattaaaagtaccagtattgtcaaatagcgactatag |
374981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 1571729 - 1571606
Alignment:
| Q |
109 |
caaagttttccattctaacatacaacctaagaagatggacaaatgggtccatgactaataaaattcacgtcatcaactccaaaggttaattaaaagtacc |
208 |
Q |
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| T |
1571729 |
caaagtttttcattctaacatgcaaccttagtagatgaacaaacgggtccatgattaataacattattgttatcaactccaaaatttaagtaaaggcact |
1571630 |
T |
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| Q |
209 |
agtattgtcaaatagcaactatag |
232 |
Q |
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| T |
1571629 |
ggtgttgtcaaatagcagctatag |
1571606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 1562662 - 1562780
Alignment:
| Q |
110 |
aaagttttccattctaacatacaacctaagaagatggacaaatgggtccatgactaataaaattcacgtcatcaactccaaaggttaattaaaagtacca |
209 |
Q |
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| T |
1562662 |
aaagtttttcattctaacatgcaaccttagtagatgaacaaacaggtacatgactaatcaaattattgttatcaactccaaa----aattaaaggtacca |
1562757 |
T |
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| Q |
210 |
gtattgtcaaatagcaactatag |
232 |
Q |
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| T |
1562758 |
gtgttgtcaaatagaagctatag |
1562780 |
T |
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