View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19680_low_16 (Length: 213)

Name: NF19680_low_16
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19680_low_16
NF19680_low_16
[»] chr6 (1 HSPs)
chr6 (16-195)||(21689553-21689726)
[»] chr2 (1 HSPs)
chr2 (147-195)||(23958929-23958977)
[»] scaffold1551 (1 HSPs)
scaffold1551 (149-190)||(1074-1115)
[»] chr4 (2 HSPs)
chr4 (149-190)||(15366302-15366343)
chr4 (144-195)||(22317374-22317425)
[»] scaffold0062 (1 HSPs)
scaffold0062 (147-195)||(1058-1106)
[»] chr3 (3 HSPs)
chr3 (147-195)||(27486607-27486655)
chr3 (126-195)||(8711914-8711979)
chr3 (126-195)||(9063801-9063866)
[»] chr5 (1 HSPs)
chr5 (147-194)||(24163060-24163107)
[»] scaffold0211 (1 HSPs)
scaffold0211 (147-195)||(25116-25164)
[»] chr8 (1 HSPs)
chr8 (147-199)||(25393986-25394038)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 21689726 - 21689553
Alignment:
Q  16 aatatcccatagatcatcatccatactcatactttcttggaataattgtctctttcatctttaaaggtgttgtaatcataatagacggttgcatgatgat 115  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21689726 aatatcccatagatcatcatccatactcatgctttcttggaataattgtctccttcatctttaaaggtgttgtaatcataatagacggttgcatgatgat 21689627  T
Q  116 ttcttcttacacacaacaattttatacgtactggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    |||||||||  |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21689626 ttcttctta--cacaacaatttta----tactggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 21689553  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 23958929 - 23958977
Alignment:
Q  147 tggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  23958929 tggttcctcttacaatccaggagtagtccagtccccttgcacttccaag 23958977  T

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Target: scaffold1551 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 1115 - 1074
Alignment:
Q  149 gttcctcttacaatcaaggagtagtccagtccccttccactt 190  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  1115 gttcctcctacaatccaggagtagtccagtccccttccactt 1074  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 15366343 - 15366302
Alignment:
Q  149 gttcctcttacaatcaaggagtagtccagtccccttccactt 190  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  15366343 gttcctcctacaatccaggagtagtccagtccccttccactt 15366302  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 22317425 - 22317374
Alignment:
Q  144 tactggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    |||||||||||| ||||||| ||||||||||||||| | || ||||||||||    
T  22317425 tactggttcctcctacaatccaggagtagtccagtctcattgcacttccaag 22317374  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 1058 - 1106
Alignment:
Q  147 tggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    ||||||||| ||||||| ||||||||||||||| |||| ||||||||||    
T  1058 tggttcctcctacaatccaggagtagtccagtctccttacacttccaag 1106  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 27486655 - 27486607
Alignment:
Q  147 tggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    |||||||||  ||||| ||||||||||||||||||||| ||||||||||    
T  27486655 tggttcctcccacaataaaggagtagtccagtccccttgcacttccaag 27486607  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 8711979 - 8711914
Alignment:
Q  126 acacaacaattttatacgtactggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    |||||||||||||||||     |||||||| ||||||  |||||||||||||||||||| | ||||||||    
T  8711979 acacaacaattttatacc----ggttcctcctacaatgcaggagtagtccagtccccttgcgcttccaag 8711914  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 9063866 - 9063801
Alignment:
Q  126 acacaacaattttatacgtactggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    |||||||||||||||||     |||||||| ||||||  |||||||||||||||||||| | ||||||||    
T  9063866 acacaacaattttatacc----ggttcctcctacaatgcaggagtagtccagtccccttgcgcttccaag 9063801  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 24163060 - 24163107
Alignment:
Q  147 tggttcctcttacaatcaaggagtagtccagtccccttccacttccaa 194  Q
    |||||||||||||||  | ||||||||||||||||||| |||||||||    
T  24163060 tggttcctcttacaaaaatggagtagtccagtccccttgcacttccaa 24163107  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 25116 - 25164
Alignment:
Q  147 tggttcctcttacaatcaaggagtagtccagtccccttccacttccaag 195  Q
    |||||||||  ||||| ||||||||||||| ||||||| ||||||||||    
T  25116 tggttcctcccacaataaaggagtagtccaatccccttgcacttccaag 25164  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 25394038 - 25393986
Alignment:
Q  147 tggttcctcttacaatcaaggagtagtccagtccccttccacttccaagtgat 199  Q
    ||||||||| ||||||  |||||||||||||||||| | ||||||||| ||||    
T  25394038 tggttcctcctacaatgtaggagtagtccagtccccgtgcacttccaaatgat 25393986  T

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