View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19680_low_18 (Length: 209)
Name: NF19680_low_18
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 38095985 - 38095834
Alignment:
| Q |
44 |
aataaataataattaatttattattttgtaaggttcaagacaaggtgactaaccagaacatccttcaactagttcagatcctttgagtacatactctgct |
143 |
Q |
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| T |
38095985 |
aataaataataattaatttattattttgtaaggttcaagacaaggtgactaaccagaacatccttcaactagttcagatcctttgagtacatactctgct |
38095886 |
T |
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| Q |
144 |
cctcctcctgatggatgtattatgtcctttagtgctaagtcatgccacacat |
195 |
Q |
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| T |
38095885 |
cctccttctgatggatgtattatgtcctttagtgctaagtcatgccacacat |
38095834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 38096023 - 38095995
Alignment:
| Q |
18 |
ttctgcaaagtaagtattagtacattaat |
46 |
Q |
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| T |
38096023 |
ttctgcaaagtaagtattagtacattaat |
38095995 |
T |
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