View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19680_low_4 (Length: 424)

Name: NF19680_low_4
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19680_low_4
NF19680_low_4
[»] chr2 (46 HSPs)
chr2 (20-408)||(38792871-38793259)
chr2 (212-408)||(39389707-39389903)
chr2 (196-405)||(39390531-39390740)
chr2 (20-354)||(38792673-38793006)
chr2 (197-408)||(39415469-39415680)
chr2 (200-381)||(38793151-38793332)
chr2 (233-377)||(39221626-39221770)
chr2 (18-84)||(39415159-39415225)
chr2 (196-377)||(39451657-39451838)
chr2 (200-405)||(39602869-39603074)
chr2 (237-325)||(38792443-38792531)
chr2 (245-381)||(39391033-39391169)
chr2 (236-356)||(39415250-39415370)
chr2 (196-280)||(39603204-39603288)
chr2 (206-393)||(39222240-39222427)
chr2 (197-292)||(39222551-39222646)
chr2 (21-344)||(39415546-39415868)
chr2 (20-62)||(38792453-38792495)
chr2 (230-322)||(38792567-38792659)
chr2 (20-84)||(39221666-39221730)
chr2 (269-348)||(39136598-39136677)
chr2 (309-408)||(39137042-39137141)
chr2 (196-306)||(39137303-39137413)
chr2 (196-306)||(39390321-39390431)
chr2 (325-407)||(39390534-39390616)
chr2 (212-377)||(39192590-39192755)
chr2 (274-407)||(39192988-39193121)
chr2 (212-377)||(39198270-39198435)
chr2 (274-407)||(39198668-39198801)
chr2 (325-393)||(39390324-39390392)
chr2 (263-407)||(39451375-39451519)
chr2 (20-63)||(39136882-39136925)
chr2 (24-59)||(39193117-39193152)
chr2 (24-59)||(39198797-39198832)
chr2 (20-91)||(39390608-39390679)
chr2 (309-348)||(39458568-39458607)
chr2 (24-82)||(39192907-39192965)
chr2 (24-82)||(39198587-39198645)
chr2 (194-243)||(39221928-39221977)
chr2 (194-243)||(39222138-39222187)
chr2 (325-406)||(39603204-39603285)
chr2 (231-371)||(39136827-39136967)
chr2 (299-343)||(39221870-39221914)
chr2 (299-343)||(39222080-39222124)
chr2 (74-138)||(39451769-39451833)
chr2 (20-80)||(39602941-39603001)
[»] chr5 (1 HSPs)
chr5 (245-407)||(33560229-33560391)
[»] chr7 (3 HSPs)
chr7 (221-348)||(19806959-19807086)
chr7 (196-371)||(19807188-19807363)
chr7 (357-393)||(19807292-19807328)


Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 38793259 - 38792871
Alignment:
Q  20 gctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaacgcttctttttcaataccagtttcttcattttgct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38793259 gctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaacacttctttttcaataccagtttcttcattttgct 38793160  T
Q  120 ttcaaattccctcacttttaaaaagaactccttcgtttggccttttgagttggttataatttgattcaaacagtttcacttggctgtcaaagtgcttctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38793159 ttcaaattccctcacttttaaaaagaactccttcgtttggcattttgagttggttataatttgattcaaacagtttcacttggctgtcaaagtgcttctt 38793060  T
Q  220 cttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttcc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38793059 cttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttcc 38792960  T
Q  320 ttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcat 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38792959 ttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcgaattctctctctattgactcaaactccttcat 38792871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 212 - 408
Target Start/End: Original strand, 39389707 - 39389903
Alignment:
Q  212 tgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaact 311  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||   || |||||| |||||||||| ||   ||||||||  ||| ||| ||||  |||    
T  39389707 tgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatgctcctgcaattggtcttcaagttgcttcccttttgact 39389806  T
Q  312 caagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcat 408  Q
    |||| ||||||||||||||||   |||||||||||||||||||| |||||| |||||||| ||||||| | |||||| |||| ||||||||| ||||    
T  39389807 caagctccttcatttggcttttataatgcttctgtttcaatacctgctcctccatttggcattcaaatcccctctcttttgattcaaactccatcat 39389903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 196 - 405
Target Start/End: Original strand, 39390531 - 39390740
Alignment:
Q  196 cacttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattt 295  Q
    ||||||||| ||||| |||||| | |||||||| || ||||||| ||| ||||||||||||| ||  ||||| |||||||||||||  |||  ||||| |    
T  39390531 cacttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgt 39390630  T
Q  296 tggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgact 395  Q
    || ||||||||  ||||||  ||||||||||||||||| ||||||||||||||  ||| ||  ||| ||||||||| |||||||||  ||||| |||| |    
T  39390631 tgcttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatccatcatttggcattcaaattccttctcttttgatt 39390730  T
Q  396 caaactcctt 405  Q
    ||||||||||    
T  39390731 caaactcctt 39390740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 38793006 - 38792673
Alignment:
Q  20 gctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaacgcttctttttcaataccagtttcttcattttgct 119  Q
    ||||||||| |||  |||||| ||| |||||||| ||||||||   ||||||  ||||||| ||| |||||| |||||||||||| | |||||||| |||    
T  38793006 gctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggct 38792907  T
Q  120 ttcaaattccctcacttttaaaaagaactccttcgtttggccttttgagttggttataatttgattcaaacagtttcacttggctgtcaaagtgcttctt 219  Q
    ||| ||||| ||| || || |    ||||||||| ||| || |    ||||||||||  ||||| || |||   || ||||| || |||||    ||||     
T  38792906 ttcgaattctctctctattgactcaaactccttcattttgcgtaca-agttggttatcttttgactccaactccttaacttgcctttcaaacaatttctg 38792808  T
Q  220 cttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttcc 319  Q
     ||||||||  | ||||||||||||||||||||||||| ||  ||||| || |||||||||| |||| |||||| ||| || |||||| ||||||| |||    
T  38792807 tttagattcctggtccttcacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtcc 38792708  T
Q  320 ttcatttggctttcgaaatgcttctgtttcaatac 354  Q
    |||||| || |||||||| ||||||||||||||||    
T  38792707 ttcattcggttttcgaaaagcttctgtttcaatac 38792673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 408
Target Start/End: Original strand, 39415469 - 39415680
Alignment:
Q  197 acttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcatttt 296  Q
    ||||| || ||||| |||||||| |||||||| |||||| ||||||| | || |||||||| ||  ||||| |||  ||||||||   |  |||||| ||    
T  39415469 acttgtctttcaaattgcttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactccttcacttgaccttcatgtt 39415568  T
Q  297 ggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactc 396  Q
    | ||||||||   |||||| |||||||||   |||| |||||||||||||||  || |||| ||||||||||||| ||||||||| |||||| |||| |     
T  39415569 gcttctcttttgcctcaagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggccttcaaattccctctcttttgattt 39415668  T
Q  397 aaactccttcat 408  Q
    ||||||||||||    
T  39415669 aaactccttcat 39415680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 381
Target Start/End: Complemental strand, 38793332 - 38793151
Alignment:
Q  200 tggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggt 299  Q
    ||||| ||||| ||| |||| ||||| || ||||||| ||||| ||||||||||||||     ||| | ||||||||||||| |||  |||||| ||| |    
T  38793332 tggctttcaaaatgcatctttttagactccagctcctccactttaccttcaaattctctagcttttaattcatgctccttcacccgaccttcatgttgct 38793233  T
Q  300 tctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattc 381  Q
    ||||||| ||||||||   ||||||  ||||||| |||  ||||| |||||||||||| | |||||||| ||||||||||||    
T  38793232 tctcttttaactcaagcatcttcatccggctttcaaaacacttctttttcaataccagtttcttcattttgctttcaaattc 38793151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 39221770 - 39221626
Alignment:
Q  233 tccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggcttt 332  Q
    ||||||| ||| ||||||||||||| ||  |||||  |||||||||||| || | |||||| ||| ||||||||  ||||||  |||||||| |||||||    
T  39221770 tccttcatttggccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttcatctggcttt 39221671  T
Q  333 cgaaatgcttctgtttcaataccagctccttcatttggctttcaa 377  Q
    | ||||| || ||||| ||  | ||||||||||||||||||||||    
T  39221670 caaaatgtttttgttttaactcaagctccttcatttggctttcaa 39221626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 39415159 - 39415225
Alignment:
Q  18 cagctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaa 84  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||  |||||| ||||||||||||    
T  39415159 cagctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggctttcaaaa 39415225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 377
Target Start/End: Complemental strand, 39451838 - 39451657
Alignment:
Q  196 cacttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattt 295  Q
    ||||||||| ||||| |||||||| |||||||| || ||||||||||  ||||||||||||| |   ||||| ||||||||| ||| |||| | |||| |    
T  39451838 cacttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgattcatgctccatcacccggccctcatgt 39451739  T
Q  296 tggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaa 377  Q
    ||  |||| || || ||||| |||| |||  |||||||  |||| ||||||||  |||| || ||||||| ||||| |||||    
T  39451738 tgcctctcatttaagtcaaggtcctccatccggctttcataatgtttctgtttagatactaggtccttcagttggccttcaa 39451657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 405
Target Start/End: Complemental strand, 39603074 - 39602869
Alignment:
Q  200 tggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggt 299  Q
    ||||| ||||| |||||||| |||||||| |||||| ||||||| |||||||| ||||  |  ||||| ||||||||||||| |||   ||||| ||  |    
T  39603074 tggctttcaaaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttcaaccgactttcatgtttct 39602975  T
Q  300 tctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaa 399  Q
    ||||||   |||| || | ||| ||  ||||||||||||| || ||||| |||| || ||||||| |||||  |||||||||  ||| | |||| |||||    
T  39602974 tctcttctgactcgagcttctttatccggctttcgaaatgtttttgttttaatatcaactccttcttttggaattcaaattccttctgttttgattcaaa 39602875  T
Q  400 ctcctt 405  Q
    ||||||    
T  39602874 ctcctt 39602869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 38792531 - 38792443
Alignment:
Q  237 tcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatt 325  Q
    ||||||||||||||||||||| | | ||||| ||||||||||||| |||  ||||||  || |||||||| |||||||| |||||||||    
T  38792531 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcatt 38792443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 381
Target Start/End: Original strand, 39391033 - 39391169
Alignment:
Q  245 ccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttct 344  Q
    |||||||||||   || |||| | |||||||||||||   || |||||  ||| ||||||||  ||||||| |||||||||||||||||  |||||||||    
T  39391033 ccttcaaattccttctcctttaattcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcatttggctttcacaatgcttct 39391132  T
Q  345 gtttcaataccagctccttcatttggctttcaaattc 381  Q
    | ||||||||| ||| | ||| ||||| |||||||||    
T  39391133 gcttcaatacctgctgcgtcaattggcattcaaattc 39391169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 356
Target Start/End: Original strand, 39415250 - 39415370
Alignment:
Q  236 ttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcga 335  Q
    ||||||||||||| || ||||| ||  ||  | |||||||||||||  ||| |||||| ||| ||  ||||| ||||||| || |||| ||||||||| |    
T  39415250 ttcacttgacctttaagttctctctcgttcaattcatgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggctttcta 39415349  T
Q  336 aatgcttctgtttcaatacca 356  Q
    |||||||||||||||||||||    
T  39415350 aatgcttctgtttcaatacca 39415370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 39603288 - 39603204
Alignment:
Q  196 cacttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttc 280  Q
    ||||||||| ||||| |||||||| |||||||| ||||||||| |||||  ||||||||||| ||  ||||| ||||||||||||    
T  39603288 cacttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttc 39603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 393
Target Start/End: Complemental strand, 39222427 - 39222240
Alignment:
Q  206 tcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctt 305  Q
    ||||| |||||||| || ||||| || ||||||| ||| ||||| ||| ||| ||  ||||| | |||||||||||   || |||||  ||| |||||||    
T  39222427 tcaaaatgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctt 39222328  T
Q  306 tcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattga 393  Q
    |  ||||||  |||||||||||||||||||||||||||  |||  || |||||| ||||   |||| ||||||||| |||||| ||||    
T  39222327 tagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctcttttga 39222240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 39222646 - 39222551
Alignment:
Q  197 acttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttca 292  Q
    |||||||| ||||  |||||||| |||||||  |||||||||||||||  ||||||||||| ||  ||||| |||||||||||||| ||| |||||    
T  39222646 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcattcggccttca 39222551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 344
Target Start/End: Original strand, 39415546 - 39415868
Alignment:
Q  21 ctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaacgcttctttttcaataccagtttcttcattttgctt 120  Q
    |||||||||  |||||||||||||||||||||||  |||||||  |||||| |  ||||  ||| |||||| |||  || |||||| |||||||| || |    
T  39415546 ctccttcacttgaccttcatgttgcttctcttttgcctcaagctccttcattctccttttgaaatgcttctgttttgatgccagttccttcatttggcct 39415645  T
Q  121 tcaaattccctcacttttaaaaagaactccttcgtttggccttttgagttggttataatttgattcaaacagtttcacttggctgtcaaagtgcttcttc 220  Q
    |||||||||||| ||||| |    ||||||||| ||||| | |  |||||| |  |  ||||| || |||   || |||||| | |||||  |||||||     
T  39415646 tcaaattccctctcttttgatttaaactccttcatttggtc-tacgagttgctgttcttttgactctaactccttgacttggatttcaaacagcttcttt 39415744  T
Q  221 ttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttcct 320  Q
    |||||||  ||||||||||| || ||||||||||||| ||  |||||  ||||||| |||| |||| ||||||  || ||||||||  | ||||| ||||    
T  39415745 ttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttcatgctgcttctcttttgattcaagctcct 39415844  T
Q  321 tcatttggctttcgaaatgcttct 344  Q
    | ||| || |||| || |||||||    
T  39415845 tgattcggttttcaaactgcttct 39415868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 38792495 - 38792453
Alignment:
Q  20 gctccttcacccgaccttcatgttgcttctcttttaactcaag 62  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  38792495 gctccttcacccgaccttcatgctgcttctcttttaactcaag 38792453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 322
Target Start/End: Complemental strand, 38792659 - 38792567
Alignment:
Q  230 agctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttc 322  Q
    |||||| |||| ||| ||| |||||||| ||| ||||| |||||||||| || | || |||||| ||| ||||||||| ||||||||||||||    
T  38792659 agctccgtcacatgatctttaaattctctcttttttgattcatgctcctccacctggccttcatgttgcttctctttcgactcaagttccttc 38792567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 39221730 - 39221666
Alignment:
Q  20 gctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaa 84  Q
    ||||||||||||  ||||||||||||||||||||| |||||| |  ||||||| |||||||||||    
T  39221730 gctccttcacccagccttcatgttgcttctcttttgactcaaactccttcatctggctttcaaaa 39221666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 39136677 - 39136598
Alignment:
Q  269 tcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgttt 348  Q
    |||||||||||||  ||| |||||  |||  |||||||| ||||||| ||||| || |||||||||||||||||||||||    
T  39136677 tcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttt 39136598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 408
Target Start/End: Complemental strand, 39137141 - 39137042
Alignment:
Q  309 actcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttcat 408  Q
    ||||||| ||| ||||| |||| || ||||| || || ||||||||||  ||||||||||||| |||||||||  ||||| |||| | ||||||||||||    
T  39137141 actcaagatccatcattcggctatcaaaatggttttgattcaataccatttccttcatttggccttcaaattccatctcttttgatttaaactccttcat 39137042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 39137413 - 39137303
Alignment:
Q  196 cacttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattt 295  Q
    ||||||||| ||||| |||||| | ||||||||||| ||| ||| || | |||||||||||| |   ||||| ||||||||| ||| |||| |||||| |    
T  39137413 cacttggctttcaaactgcttcattttagattctagatccatcattttaacttcaaattctctcacttttgattcatgctccatcacccggccttcatgt 39137314  T
Q  296 tggttctcttt 306  Q
    || ||||||||    
T  39137313 tgtttctcttt 39137303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 39390321 - 39390431
Alignment:
Q  196 cacttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattt 295  Q
    ||||||||| ||||| |||||| | |||||||| || ||||||| ||| ||||||||||||| ||  |||||  ||||||||||||  |||  ||||| |    
T  39390321 cacttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttcatgt 39390420  T
Q  296 tggttctcttt 306  Q
    || ||||||||    
T  39390421 tgcttctcttt 39390431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 407
Target Start/End: Original strand, 39390534 - 39390616
Alignment:
Q  325 ttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttca 407  Q
    ||||||||| |||||||||  |||  || |||| ||||||||||||| |||||||||||||||| |||| |||  ||||||||    
T  39390534 ttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttca 39390616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 377
Target Start/End: Original strand, 39192590 - 39192755
Alignment:
Q  212 tgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaact 311  Q
    ||||||||  ||||||| || ||||||||||| ||||| ||||||| ||  ||||| ||| |||||||||   || ||||||  || ||||||||  |||    
T  39192590 tgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgact 39192689  T
Q  312 caagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaa 377  Q
    |||  ||||||| ||||| ||| ||  |||||| |||  || |||||||||||| |||||| ||||    
T  39192690 caaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaa 39192755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 39192988 - 39193121
Alignment:
Q  274 ctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctt 373  Q
    |||||||| ||| ||||||  ||  |||||||| || ||||| ||||||||  || |||||||||||| ||||||  |||||   ||| ||||||||| |    
T  39192988 ctccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcat 39193087  T
Q  374 tcaaattctctctctattgactcaaactccttca 407  Q
    ||||||||  ||||| |||| ||||||| |||||    
T  39193088 tcaaattccttctcttttgattcaaacttcttca 39193121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 377
Target Start/End: Original strand, 39198270 - 39198435
Alignment:
Q  212 tgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaact 311  Q
    ||||||||  ||||||| || ||||||||||| ||||| ||||||| ||  ||||| ||| |||||||||   || ||||||  || ||||||||  |||    
T  39198270 tgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgact 39198369  T
Q  312 caagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaa 377  Q
    |||  ||||||| ||||| ||| ||  |||||| |||  || |||||||||||| |||||| ||||    
T  39198370 caaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaa 39198435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 39198668 - 39198801
Alignment:
Q  274 ctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggctt 373  Q
    |||||||| ||| ||||||  ||  |||||||| || ||||| ||||||||  || |||||||||||| ||||||  |||||   ||| ||||||||| |    
T  39198668 ctccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgataccgagtccgtcatttggcat 39198767  T
Q  374 tcaaattctctctctattgactcaaactccttca 407  Q
    ||||||||  ||||| |||| ||||||| |||||    
T  39198768 tcaaattccttctcttttgattcaaacttcttca 39198801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 39390324 - 39390392
Alignment:
Q  325 ttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattga 393  Q
    ||||||||| |||||||||  |||  || |||| ||||||||||||| |||||||||||||||| ||||    
T  39390324 ttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttga 39390392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 407
Target Start/End: Complemental strand, 39451519 - 39451375
Alignment:
Q  263 tttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctcct 362  Q
    ||||| ||||||||||||| ||||  ||||  ||| ||||| ||  | ||||| |||| |||  |||||||  |||| |||||||| ||| ||| |||||    
T  39451519 tttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcctccatccggctttcataatgtttctgttttaattccaactcct 39451420  T
Q  363 tcatttggctttcaaattctctctctattgactcaaactccttca 407  Q
    ||||||| |||||||| ||| | ||| |||  |||||||||||||    
T  39451419 tcatttgactttcaaactctttttcttttgtttcaaactccttca 39451375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 39136925 - 39136882
Alignment:
Q  20 gctccttcacccgaccttcatgttgcttctcttttaactcaagc 63  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||    
T  39136925 gctccttcacccggccttcatgctgcttctcttttgactcaagc 39136882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 39193117 - 39193152
Alignment:
Q  24 cttcacccgaccttcatgttgcttctcttttaactc 59  Q
    |||||||||||||||||||||| |||||||||||||    
T  39193117 cttcacccgaccttcatgttgcatctcttttaactc 39193152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 39198797 - 39198832
Alignment:
Q  24 cttcacccgaccttcatgttgcttctcttttaactc 59  Q
    |||||||||||||||||||||| |||||||||||||    
T  39198797 cttcacccgaccttcatgttgcatctcttttaactc 39198832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 39390608 - 39390679
Alignment:
Q  20 gctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaaaacgcttct 91  Q
    |||||||||| || | ||||||||||||||||||| |||||| |  ||||||  ||||||||||| ||||||    
T  39390608 gctccttcactcggctttcatgttgcttctcttttgactcaaactccttcatttggctttcaaaatgcttct 39390679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 39458607 - 39458568
Alignment:
Q  309 actcaagttccttcatttggctttcgaaatgcttctgttt 348  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  39458607 actcaagctccttcattcggctttcgaaatgcttctgttt 39458568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 39192907 - 39192965
Alignment:
Q  24 cttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaa 82  Q
    |||||||||||||||||||||| |||| ||| ||||||||  ||||||  |||||||||    
T  39192907 cttcacccgaccttcatgttgcatctcgtttgactcaagctccttcatttggctttcaa 39192965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 39198587 - 39198645
Alignment:
Q  24 cttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttcaa 82  Q
    |||||||||||||||||||||| |||| ||| ||||||||  ||||||  |||||||||    
T  39198587 cttcacccgaccttcatgttgcatctcgtttgactcaagctccttcatttggctttcaa 39198645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 39221977 - 39221928
Alignment:
Q  194 ttcacttggctgtcaaagtgcttcttcttagattctagctccttcacttg 243  Q
    ||||||||||| |||||  ||||||| |||||||| ||||||||||||||    
T  39221977 ttcacttggctttcaaacagcttctttttagattccagctccttcacttg 39221928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 39222187 - 39222138
Alignment:
Q  194 ttcacttggctgtcaaagtgcttcttcttagattctagctccttcacttg 243  Q
    ||||||||||| |||||  ||||||| |||||||| ||||||||||||||    
T  39222187 ttcacttggctttcaaacagcttctttttagattccagctccttcacttg 39222138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 39603285 - 39603204
Alignment:
Q  325 ttggctttcgaaatgcttctgtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttc 406  Q
    ||||||||| |||||||||| |||  || |||||||||||  |||  ||||||||||||||||| |||| |||  |||||||    
T  39603285 ttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttc 39603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 371
Target Start/End: Complemental strand, 39136967 - 39136827
Alignment:
Q  231 gctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggct 330  Q
    ||||| ||||||| | ||||||||||| ||  |||||  |||||||||||| |||| ||||||  || ||||||||  ||||||| ||||| ||| || |    
T  39136967 gctccatcacttggctttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctccttgattcggtt 39136868  T
Q  331 ttcgaaatgcttctgtttcaataccagctccttcatttggc 371  Q
     || || || |||| |||  || |||||||||||| |||||    
T  39136867 ctcaaactggttctttttagattccagctccttcacttggc 39136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 39221914 - 39221870
Alignment:
Q  299 ttctctttcaactcaagttccttcatttggctttcgaaatgcttc 343  Q
    ||||||||  ||||||  |||||||||||||||||||||||||||    
T  39221914 ttctctttagactcaaactccttcatttggctttcgaaatgcttc 39221870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 39222124 - 39222080
Alignment:
Q  299 ttctctttcaactcaagttccttcatttggctttcgaaatgcttc 343  Q
    ||||||||  ||||||  |||||||||||||||||||||||||||    
T  39222124 ttctctttagactcaaactccttcatttggctttcgaaatgcttc 39222080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 39451833 - 39451769
Alignment:
Q  74 ggctttcaaaacgcttctttttcaataccagtttcttcattttgctttcaaattccctcactttt 138  Q
    ||||||||||| ||||||||||  || |||| | ||||| ||||| ||||||||| |||||||||    
T  39451833 ggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcactttt 39451769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 39603001 - 39602941
Alignment:
Q  20 gctccttcacccgaccttcatgttgcttctcttttaactcaagcatcttcatccggctttc 80  Q
    ||||||||| ||||| |||||||| |||||||| | |||| ||| |||| |||||||||||    
T  39603001 gctccttcaaccgactttcatgtttcttctcttctgactcgagcttctttatccggctttc 39602941  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 407
Target Start/End: Complemental strand, 33560391 - 33560229
Alignment:
Q  245 ccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttct 344  Q
    |||||||||||   || |||||| |||||||| ||||  ||| |||||  ||| ||||||||  ||| ||| |||||||||||||||||  |||||| ||    
T  33560391 ccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggctttctcaatgctcct 33560292  T
Q  345 gtttcaataccagctccttcatttggctttcaaattctctctctattgactcaaactccttca 407  Q
    ||||||||||  |||||||||||||| ||||||| ||  ||||| |||| |||||||||||||    
T  33560291 gtttcaatacatgctccttcatttggttttcaaaatccttctcttttgattcaaactccttca 33560229  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 348
Target Start/End: Complemental strand, 19807086 - 19806959
Alignment:
Q  221 ttagattctagctccttcacttgaccttcaaattctcgcttctt-tgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttcc 319  Q
    |||||||| ||||| |||||| | |||||||||||| | ||||| ||| |||||||||||||  ||| |||||  |||  |||||||| ||||||| |||    
T  19807086 ttagattccagctcattcactcggccttcaaattcttg-ttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctcc 19806988  T
Q  320 ttcatttggctttcgaaatgcttctgttt 348  Q
    || || |||||||||||||||||||||||    
T  19806987 ttaatatggctttcgaaatgcttctgttt 19806959  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 371
Target Start/End: Complemental strand, 19807363 - 19807188
Alignment:
Q  196 cacttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattt 295  Q
    ||||||||| |||||  ||||||| |||||||   ||||| ||| ||| | ||||||||||| ||  |||||  ||||||||||||||||| ||||||      
T  19807363 cacttggctttcaaacagcttctttttagattgctgctccatcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttcatgc 19807264  T
Q  296 tggttctctttcaactcaagttccttcatttggctttcgaaatgcttctgtttcaataccagctccttcatttggc 371  Q
    || ||||||||  ||||||| ||||| ||| || |||| || ||| ||| |||  || |||||||||||| |||||    
T  19807263 tgcttctcttttgactcaagctccttgattcggttttcaaactgcctctttttagattccagctccttcacttggc 19807188  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 19807328 - 19807292
Alignment:
Q  357 gctccttcatttggctttcaaattctctctctattga 393  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  19807328 gctccatcatttggctttcaaattctctctcttttga 19807292  T

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