View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19680_low_5 (Length: 422)
Name: NF19680_low_5
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 28595931 - 28595675
Alignment:
| Q |
16 |
aagcataggtttacaaattagtcatatacacaaatataaagatttgcatgtttgnnnnnnn---tgggttagtgatgaacttaccagataaagtcaccat |
112 |
Q |
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| T |
28595931 |
aagcataggtttacaaattagtcatatacacaaatataaagatttccatgttttgaaaaaaaaatgggttagtgatgaacttaccagataaagtaaccat |
28595832 |
T |
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| Q |
113 |
atctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaac-ttttactagc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28595831 |
atctttgagagtaagacctttattggtaaaatgggatattagagttgttagatcatctgtaaattttggaaggtctgaattggccaaactttttactagc |
28595732 |
T |
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| Q |
212 |
aatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat |
268 |
Q |
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| T |
28595731 |
aatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcat |
28595675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 32494152 - 32493895
Alignment:
| Q |
16 |
aagcataggtttacaaattagtcatatacacaaatataaaga----tttgcatgtttgnnnnnnntgggttagtgatgaacttaccagataaagtcacca |
111 |
Q |
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| T |
32494152 |
aagcataggtttataaatcagccatacacacaaatataaataaacatgtgcatgtttgaaacaaatgggtcagtgatgaacttaccagataaagtaacca |
32494053 |
T |
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| Q |
112 |
tatctttgagagtaagacctttattggtaaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagc |
211 |
Q |
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| T |
32494052 |
tatctttgagagtaagacctttattggtaaaatgggctataagagttgttagatcatccgtaaattttggaaggtctgaattggcctgacttttgctagc |
32493953 |
T |
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| Q |
212 |
aatggtagagtctcttcttccaagttttaccgtccatgatggaccacccacctgcatc |
269 |
Q |
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| T |
32493952 |
aacggtggagtctcttcttccgagttttaccgtccatgacggaccacccacctgcatc |
32493895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 28592181 - 28592311
Alignment:
| Q |
139 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
238 |
Q |
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| T |
28592181 |
taaaatgagatataagagttgtaagatcgtccgtaaataacggaaggtcagtattggccaaacttttgcttgctgtggtagagtctctccgtccaagttt |
28592280 |
T |
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| Q |
239 |
taccgtccatgatggaccacccacctgcatc |
269 |
Q |
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| T |
28592281 |
taccgtccatgatggaccacccacctgcatc |
28592311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 28595606 - 28595541
Alignment:
| Q |
336 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccag |
401 |
Q |
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| T |
28595606 |
aacttacagcaaatgatgcatcacgtgccgctattgctacaatgtcagcacaagacacaactccag |
28595541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 28587083 - 28587203
Alignment:
| Q |
139 |
taaaatgggatataagagttgttagatcatctgtaaattttggaaggtctgaattggccaaacttttactagcaatggtagagtctcttcttccaagttt |
238 |
Q |
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| T |
28587083 |
taaaatgagatataagagttgtaagatcgtctgtaaataacggaaggtcggtattggccaaacttttgcttgctgttgtagagtctcttcttccaagttt |
28587182 |
T |
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| Q |
239 |
taccgtccatgatggaccacc |
259 |
Q |
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| T |
28587183 |
tactgtccatgacgggccacc |
28587203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 32493818 - 32493753
Alignment:
| Q |
336 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccag |
401 |
Q |
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|||||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |
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| T |
32493818 |
aacttacagcaaatgatgcatcacgagctgctactgctacgatgtcagcacaagacacaactccag |
32493753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 28592386 - 28592449
Alignment:
| Q |
336 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactcc |
399 |
Q |
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|||||||| |||||||||||||||||||||| | |||| ||||| || |||||||||||||| |
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| T |
28592386 |
aacttacagcaaatgatgcatcacgtgctgccacagctagtatgtccgcgcaagacacaactcc |
28592449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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