View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19680_low_7 (Length: 346)
Name: NF19680_low_7
Description: NF19680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19680_low_7 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 888355 - 888696
Alignment:
| Q |
5 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgcat |
104 |
Q |
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| T |
888355 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgcat |
888454 |
T |
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| Q |
105 |
atatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatatgatagcattgtagaacctgatttttgcttaaatgacaaaaa |
204 |
Q |
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| T |
888455 |
atatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatatgatagcattgtagaacctgatttttgcttaaatgacaaaaa |
888554 |
T |
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| Q |
205 |
cagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaacataactttctgtgatttctgctaagtgcaaacacagtcca |
304 |
Q |
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| T |
888555 |
cagaatttcattaataaaataacaagcaaatattgtcatctttattgaaatcctcaaaacataactttctgtgatttctgctaagtgcaaacacagtcca |
888654 |
T |
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| Q |
305 |
taatgtgtgttattagaccataggatacaagaatttccaaac |
346 |
Q |
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| T |
888655 |
taatgtgtgttattagaccataggatacaagaatttccaaac |
888696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 91 - 346
Target Start/End: Complemental strand, 1002938 - 1002675
Alignment:
| Q |
91 |
gttacgactcgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacata-tatgatagcattgtagaacctgatttttg |
189 |
Q |
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| T |
1002938 |
gttacgactcacatatatcgtgacagagcgacgaccatagttataactactaaatgactaagaacacataatacgatagcattgtagaacctgttttttg |
1002839 |
T |
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| Q |
190 |
cttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaacat---aactttctgtgatttctgct |
286 |
Q |
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| T |
1002838 |
cttaaatggcaaaaacagaatttcattaataaaatagcatgcaaatatttcca---ttattgaaatcctcagaacataacaactttctgtgatttctgct |
1002742 |
T |
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| Q |
287 |
aag-------tgcaaacacagtccataatgtgtgttattagaccataggatacaagaatttccaaac |
346 |
Q |
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| T |
1002741 |
aagtgcaaactgcaaacacagtccataatgtgtgttattagactataggatacaagaatttccaaac |
1002675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 496098 - 496177
Alignment:
| Q |
7 |
gaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatc |
88 |
Q |
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| T |
496098 |
gaaccgatttgtgacagtcctttcgtgtactatgatcaccacatgtggcaaaatcagttagtg--atacatattactgcatc |
496177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 16451 - 16373
Alignment:
| Q |
5 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattact |
83 |
Q |
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| T |
16451 |
atgaaccaatttgtgacagtcctttcttgtaccatgatcatcacatgtggcaaaatcaggtagtaatatacatattact |
16373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 7553384 - 7553339
Alignment:
| Q |
178 |
acctgatttttgcttaaatgacaaaaacagaatttcattaataaaa |
223 |
Q |
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| T |
7553384 |
acctggtttttgcttaaatgacaaaaaccgaattgcattaataaaa |
7553339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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