View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19681_high_1 (Length: 590)
Name: NF19681_high_1
Description: NF19681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19681_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 25 - 586
Target Start/End: Original strand, 33790638 - 33791189
Alignment:
| Q |
25 |
tcacatttatattcttccatttcgcggacagtattcttcctaaataataacattgctcttagataaatatatatttggtccatttttaattgttcttgtc |
124 |
Q |
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| T |
33790638 |
tcacatttatattcttccatttcgcggacagtattcttcctaaataataacattgctcttagataaatatatatttggtccatttttaattgttcttgtc |
33790737 |
T |
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| Q |
125 |
atataannnnnnnaatgacttcattccttnnnnnnngtataactcgttcggtcttttatttcacaatgaataatggtgaccacatcaattgcatattcat |
224 |
Q |
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| T |
33790738 |
atataatttttttaatgacttcattccttaaaaaaagtataactcgttcggtcttttatttcacaatgaataatggtgaccacatcaattgcatatt--- |
33790834 |
T |
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| Q |
225 |
cataatttttaggaagctgcatatttatcttactctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttaatttcagg |
324 |
Q |
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| T |
33790835 |
-------tttaggcagctgcatatttatcttactctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcagg |
33790927 |
T |
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| Q |
325 |
ggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatga |
424 |
Q |
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| T |
33790928 |
ggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatga |
33791027 |
T |
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| Q |
425 |
aatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggacca |
524 |
Q |
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| T |
33791028 |
aatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggacca |
33791127 |
T |
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| Q |
525 |
agttacaatgttcctacaggaagacgtgatggattagtatcaactgttgatgatgtccatct |
586 |
Q |
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| T |
33791128 |
agttacaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 560
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
446 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
545 |
Q |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
546 |
agacgtgatggatta |
560 |
Q |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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