View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19681_low_2 (Length: 442)
Name: NF19681_low_2
Description: NF19681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19681_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 203 - 428
Target Start/End: Complemental strand, 2044433 - 2044206
Alignment:
| Q |
203 |
gttcttggtttgtaagacaaggatgggtaaggtcttgagatttcaatagaaaaattacttgaccttagcaccaatgccaaatattaaaccaagattgttt |
302 |
Q |
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| T |
2044433 |
gttcttggtttgtatgacaaggatgggtaaggtcttgagatttcaatagaaaaattacttgaccttagcaccaatgccaaatattaaaccaagattgttt |
2044334 |
T |
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| Q |
303 |
ttattgtgttgaagtc--atattgctgggtatatgagttatggtaaactctcatgctttatataatggtagaaatgaaagttttggttctatatttagaa |
400 |
Q |
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| T |
2044333 |
ttattgtgttgaagtcatatattgctgggtatatgagttatggtaaactctcatgctttatataatggtagaaatgaaagttttggttctatatttagaa |
2044234 |
T |
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| Q |
401 |
ccttatgtggtggataaccgttctattt |
428 |
Q |
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| T |
2044233 |
ccttatgtggtggataaccgttctattt |
2044206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 203 - 424
Target Start/End: Original strand, 2287353 - 2287574
Alignment:
| Q |
203 |
gttcttggtttgtaagacaaggatgggtaaggtcttgagatttcaatagaaaaattacttgaccttagcaccaatgccaaatattaaaccaagattgttt |
302 |
Q |
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| T |
2287353 |
gttcttggtttgtaagacaaggatgggtaaggtctagagatctcaatagaaaaattacttgaccttagcaccaatgccaaatattaaaccaagattgttt |
2287452 |
T |
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| Q |
303 |
ttattgtgttgaagtcatattgctgggtatatgagttatggtaaactctcatgctttatataatggtagaaatgaaagttttggttctatatttagaacc |
402 |
Q |
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| T |
2287453 |
ttattgtgttgaagtcatattgctgggtatatgagttatggtaaactctcatgctttatataatgttagaaatgaaagttttagttctatatttagaagc |
2287552 |
T |
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| Q |
403 |
ttatgtggtggataaccgttct |
424 |
Q |
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| T |
2287553 |
ttatgtagtggataaccgttct |
2287574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 33360420 - 33360255
Alignment:
| Q |
1 |
tttatttttaattttataaaatttgtaagttatcatatatatgatttcgtaaatgatataagaaaagtacttttcatagaaattatatttatttgttgaa |
100 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
33360420 |
tttatttttaattttatgaaatttgtatgttatcatatatatgattcgttacatgatagaagaaaagtacttttcatagaatttatatttattgattgaa |
33360321 |
T |
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| Q |
101 |
tttgttacacaagtaatacagtgatatgttgcacataaagattgactaagttaaaatcgaaaattt |
166 |
Q |
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| T |
33360320 |
tttgttacacaagtagtacaatgatatgtggcacataaagattaacatagtgaaaatcgagaattt |
33360255 |
T |
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