View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19681_low_7 (Length: 201)
Name: NF19681_low_7
Description: NF19681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19681_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 2099761 - 2099930
Alignment:
| Q |
18 |
actatgaatggtgatagatgttatgaccccaaaaagaagcttcattttgatacattatattcttcctaatatttttactaaaattttagggaattagtag |
117 |
Q |
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| T |
2099761 |
actatgaatggtgatagatgttatgaccccaaaaagaagcttcattttgatacattatattcttcctaatatttttactaaaattttagggaattagtag |
2099860 |
T |
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| Q |
118 |
aacatagaatacaatttgtctaaagaagtattaggaaacttgattttgaaaacctccaactccacctttg |
187 |
Q |
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| T |
2099861 |
aacatagaatacaatttgtctaaagaagtattaggaaacttgattttgaaaacctccaactccacctttg |
2099930 |
T |
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Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 2107957 - 2108096
Alignment:
| Q |
38 |
ttatgaccccaaaaagaagcttcattttgatacattatattcttc-------ctaatatttttactaaaattttagggaattagtagaacatagaataca |
130 |
Q |
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| T |
2107957 |
ttatgaccccaaaaagaagcttcattttgatacattatattcttcaatcttcctagtatttttactaaaaatgtaagggatttgtagaacatacaatgca |
2108056 |
T |
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| Q |
131 |
atttgtctaaagaagtattaggaaacttgattttgaaaac |
170 |
Q |
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| T |
2108057 |
atttgtctaaagaagtattaggaaacttgattttgaaaac |
2108096 |
T |
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