View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19682_low_1 (Length: 518)
Name: NF19682_low_1
Description: NF19682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19682_low_1 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 155 - 518
Target Start/End: Original strand, 6627838 - 6628203
Alignment:
| Q |
155 |
gtgtaaacgatcacacggtttggcaacgccaaatgcgctgctctaccgttcccgccagatgtgcaaacttctttttctatcnnnnnnnnnn--ccctcac |
252 |
Q |
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| T |
6627838 |
gtgtaaacgatcacacggtttggcaacgccaaatgcgctgctctaccgttcccgccagatgtgcaaacttctttttctatcttttttttttttccctcac |
6627937 |
T |
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| Q |
253 |
caaacgaacaaaattgtggaggtgtgtttagtataaatatatgtaatatgatttaggctattgtatgtacggtgggtccattgaacctatattttttcct |
352 |
Q |
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| T |
6627938 |
caaacgaacaaaattgtggaggtgtgtttagtaaaaatatatgtaatatgatttaggctattgtatgtacggtgggtccattgaacctatattttttcct |
6628037 |
T |
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| Q |
353 |
tggcccactgttttggcaatttcgtatgaaaattgctgttcacacatatgcaaaggcttaaacacgcatataaatgactgaaatacccttacgatagtta |
452 |
Q |
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| T |
6628038 |
tggcccactgttttggcaatttcatatgaaaattgctgttcacacatatgcaaaggcttaaacacgcatataaatgactgaaatacccttacgatagtta |
6628137 |
T |
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| Q |
453 |
actgtcgaggaaaggaatcggctttcttcggcagttaattgccgatgtgtcaacaacaataaaaaa |
518 |
Q |
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| T |
6628138 |
actgtcgaggaaaggaaccggctttcttcggaagttaatttccgatgtgtcaacaacaattaaaaa |
6628203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 378 - 510
Target Start/End: Complemental strand, 6628404 - 6628279
Alignment:
| Q |
378 |
atgaaaattgctgttcacacatatgcaaaggcttaaacacgcatataaatgactgaaatacccttacgatagttaactgtcgaggaaaggaatcggcttt |
477 |
Q |
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| T |
6628404 |
atgaaaattgttgttcacacatatgcaaaggctgaaacacacatataaatgaatgaaataccctcgcggtagttaactgccgaggaaaggaaccggct-- |
6628307 |
T |
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| Q |
478 |
cttcggcagttaattgccgatgtgtcaacaaca |
510 |
Q |
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| T |
6628306 |
-----gcagttaactgccgatgtgtcaacaaca |
6628279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 6627703 - 6627733
Alignment:
| Q |
20 |
agaaggaaaaagagaggaaagaaaatgtaga |
50 |
Q |
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| T |
6627703 |
agaaggaaaaagagaggaaagaaaatgtaga |
6627733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 474
Target Start/End: Complemental strand, 18442234 - 18442138
Alignment:
| Q |
378 |
atgaaaattgctgttcacacatatgcaaaggcttaaacacgcatataaatgactgaaatacccttacgatagttaactgtcgaggaaaggaatcggc |
474 |
Q |
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| T |
18442234 |
atgaaaattgttgttaacacatatgcaaaggctgaaacacacatgtaaatgattgaaataccccgacggcagttaactaccgaggaaaggaaccggc |
18442138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 474
Target Start/End: Complemental strand, 19487308 - 19487212
Alignment:
| Q |
378 |
atgaaaattgctgttcacacatatgcaaaggcttaaacacgcatataaatgactgaaatacccttacgatagttaactgtcgaggaaaggaatcggc |
474 |
Q |
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| T |
19487308 |
atgaaaattgttgttaacacatatgcaaaggctgaaacacacatgtaaatgattgaaataccccgacggcagttaactaccgaggaaaggaaccggc |
19487212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 43785927 - 43785866
Alignment:
| Q |
377 |
tatgaaaattgctgttcacacatatgcaaaggcttaaacacgcatataaatgactgaaataccc |
440 |
Q |
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| T |
43785927 |
tatgaaaattgctgttcacacat--gcaaaagctgaaacacacatataaatgactgaaataccc |
43785866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 464
Target Start/End: Complemental strand, 40039819 - 40039739
Alignment:
| Q |
383 |
aattgctgttcacacatatgcaaaggcttaaacacgcatataaatgactgaaatacccttacgatagttaactgtcgaggaa |
464 |
Q |
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| T |
40039819 |
aattgttgttgacatatatgcaaaggctgataaacacatgtaaaagacaaaaataccctt-cgatagttaactgtcgaggaa |
40039739 |
T |
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