View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19683_high_1 (Length: 462)
Name: NF19683_high_1
Description: NF19683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19683_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 203 - 438
Target Start/End: Original strand, 15785254 - 15785493
Alignment:
| Q |
203 |
gcgttgtgggtaatctgtatctgcaaatctaggaagaaataaattgtgggtcagattgaaatgcacgtgaattgtagtcttaagtatgtgtttataccaa |
302 |
Q |
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| T |
15785254 |
gcgttgggggtaatctgtatctacaaatctaggaagaaataaattgtgggtaagattgaaatgcacgtgaattgcaagcttga--atgtgtttataccaa |
15785351 |
T |
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| Q |
303 |
aaattgaataaaaactaaaactgaaattataacatagatttgagcttaa------aagtgat-gaattagcgtaaattaagataaggataaatgggttaa |
395 |
Q |
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| T |
15785352 |
aaattgaatgaaaactaaat-taaaattataacatagatttgagcttaagcttaaaagtaaaagaattagcgtaaattaagataaggataaatgggttaa |
15785450 |
T |
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| Q |
396 |
gaataagatgaaaaaagaatgagagtatatgaaattgaagatg |
438 |
Q |
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| T |
15785451 |
gaataagatgaaaaaagaatgagaggatgtgaaattgaagatg |
15785493 |
T |
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