View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19683_high_10 (Length: 239)
Name: NF19683_high_10
Description: NF19683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19683_high_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 45955705 - 45955464
Alignment:
| Q |
18 |
agtttcaccatttttaaatacaaaaatcttatgaatttaaactaatggttttaaaatatgggaaccaaaattgtaagtaaaagccttaacaacgcttcct |
117 |
Q |
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| T |
45955705 |
agtttcaccatttttaaatacaaaaatcttatgaatttaaactaatggttttaaaatatgggaaccaaaattgtaagtaaaagcc-taacaacgcttcct |
45955607 |
T |
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| Q |
118 |
ttctaaatttccgatgtatattgtcttagcttgtgacattatcttagcca---------------------ttattttataggtctacaatctgaagcat |
196 |
Q |
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| T |
45955606 |
ttctaaatttccgatgtatattgtcttagcttgtgacattatcttagccattaatttgtgtgtgtatgtccttattttataggtctacaatctgaagcat |
45955507 |
T |
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| Q |
197 |
gaattttcctcacattagatggatggtgcattttgtttatctt |
239 |
Q |
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| T |
45955506 |
gaattttcctcacattagatggatggtgcattttctttatctt |
45955464 |
T |
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