View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19683_low_2 (Length: 449)
Name: NF19683_low_2
Description: NF19683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19683_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 35340545 - 35340974
Alignment:
| Q |
8 |
cgaagaaaattgatattaattaaaaatgacactaattaccatttttacaattgtatcaaagacaattttgtccagattccctacatatataataaagact |
107 |
Q |
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| T |
35340545 |
cgaaaaaaattgatattaattaaaaatgacactaattaccatttt-acaattgtatcaaagacaatattgtccagattccctacatatataataaagact |
35340643 |
T |
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| Q |
108 |
gcaagaaatagaggatatgat----atttttaaattgatctaaggtgatagtaggttatagaacaaactaattccatcagctgcacggtgcaacacatgt |
203 |
Q |
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| T |
35340644 |
gcaagaaatagaggatatgatcgatatttttaaattgatctaaggtgatagtagtttatagaacaaactaattccatcagctgcacggtgcaacacatgt |
35340743 |
T |
|
| Q |
204 |
atgtgctgcagccatattaattatcca-cacaccatttcgttagagttagatataataacttcattgtgtttttggcgtagctcctctcatctgataatc |
302 |
Q |
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||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35340744 |
atgtgctgcagccatatcaattatagaacacaccatttcgttagagttagatataataactttattgtgtttttggcgtagctcctctcatctgataatc |
35340843 |
T |
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| Q |
303 |
attttggagacaatctctcgtgaaaatgtttaattgtagttcaccatgtagaaaaaataaacattactttccactgaacccaatattagcagcattatat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35340844 |
attttggagacaatctctcgtgaaaatgtttaattgtagttcaccatgtagaaaaaataaacattactttccacttaacccaatattagcagcattatat |
35340943 |
T |
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| Q |
403 |
cataccagacaaacaattcatgttcaacaaa |
433 |
Q |
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| T |
35340944 |
cataccagacaaacaattcatgttcaacaaa |
35340974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 77 - 305
Target Start/End: Original strand, 13579879 - 13580109
Alignment:
| Q |
77 |
gtccagattccctacatatataataaagactgcaagaaatagaggatatgatatttttaaattgatctaaggtgatagtaggttatagaacaaactaatt |
176 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
13579879 |
gtcctgattccctacatatataataaagactgcaagaaatagaggatatgatatttgtaaattgatctaagttgatagtagtttatagaacaaagtaatt |
13579978 |
T |
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| Q |
177 |
ccatcagctgcacggtgcaacacatgtatgtgctgcagccatattaattatccacacaccatttcgttagagttagatata--ataacttcattgtgttt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
13579979 |
ccatcagctgcacggtgcaacacatgtatgtgctgcagccatatcaattctccacacaccatttcgttagagttagatataatataactttattgtgttt |
13580078 |
T |
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| Q |
275 |
ttggcgtagctcctctcatctgataatcatt |
305 |
Q |
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| T |
13580079 |
ttggcgtagctcctctcatttgataatcatt |
13580109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 13579791 - 13579852
Alignment:
| Q |
13 |
aaaattgatattaattaaaaatgacactaattaccatttttacaattgtatcaaagacaattt |
75 |
Q |
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| T |
13579791 |
aaaattgatattaattaaaaatgacactaattacca-ttttacaattgtatcaaagaaaattt |
13579852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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