View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19683_low_3 (Length: 360)

Name: NF19683_low_3
Description: NF19683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19683_low_3
NF19683_low_3
[»] chr4 (13 HSPs)
chr4 (1-360)||(38086404-38086763)
chr4 (5-360)||(38072898-38073253)
chr4 (5-357)||(38061538-38061884)
chr4 (5-357)||(38058570-38058916)
chr4 (5-360)||(38081983-38082326)
chr4 (221-346)||(38077976-38078102)
chr4 (272-353)||(37954490-37954571)
chr4 (5-66)||(38090804-38090865)
chr4 (5-73)||(36080196-36080264)
chr4 (5-94)||(37954232-37954321)
chr4 (5-42)||(38125638-38125675)
chr4 (5-42)||(38129591-38129628)
chr4 (3-60)||(34971530-34971587)
[»] chr6 (3 HSPs)
chr6 (5-140)||(7001405-7001540)
chr6 (110-189)||(10792936-10793015)
chr6 (5-42)||(10792886-10792923)
[»] chr1 (2 HSPs)
chr1 (110-189)||(34268620-34268699)
chr1 (5-42)||(34268712-34268749)
[»] chr2 (1 HSPs)
chr2 (2-43)||(11787021-11787062)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 38086404 - 38086763
Alignment:
Q  1 tttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086404 tttcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgttt 38086503  T
Q  101 actgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaatattgtct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086504 actgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaatattgtct 38086603  T
Q  201 ggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggaggtgtagataaactcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086604 ggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggaggtgtagataaactcat 38086703  T
Q  301 acccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaat 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086704 acccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaat 38086763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 38072898 - 38073253
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || ||||||||||    
T  38072898 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcaagttccatcaactgtaacggtgtttactg 38072997  T
Q  105 ttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaatattgtctggca 204  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||   ||||||||| |||||  ||||||| |||||| ||| |||    
T  38072998 ttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttagccattaatattatcttgca 38073097  T
Q  205 aagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggaggtgtagataaactcataccc 304  Q
    |||| || ||||||||||||||||| |||||||| |||||||| | ||||||| |||||||||| | |||||||| ||| |||||||||| ||| |||||    
T  38073098 aaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaagtgtagataacctcttaccc 38073197  T
Q  305 ttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaat 360  Q
    ||| |  |||| ||||||||||| |||||||||||||||||| ||||| |||||||    
T  38073198 ttgatggaagaaaagtttcctgaacttggtttggttagagaagattgtgttgaaat 38073253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 5 - 357
Target Start/End: Complemental strand, 38061884 - 38061538
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactg 104  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||| |||| ||||||| | ||    
T  38061884 ttttgggctattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttcaagttccatcaagtgtgtcagtgttcaatg 38061785  T
Q  105 ttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaatattgtctggca 204  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||| | |||||||||| ||||||||  || || ||| |||    
T  38061784 tgccaaaaacattggatcaaaatgcaacaaagcttgttcacaagtggcagtttgtgacaagtacaattgatgaaaacatagccatttatgttatcttgca 38061685  T
Q  205 aagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggaggtgtagataaactcataccc 304  Q
    ||||||||||||      ||||||||||||| ||||||| ||| | |||| || |||||||||||| |||||||||||| |||||||||||||||| |||    
T  38061684 aagggtaaattt------aagtaaaaaaggtaagtcaaattcaacagtacaagctttatttcaagccttgtttcttggaagtgtagataaactcattccc 38061591  T
Q  305 ttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattga 357  Q
    ||| |  |||| |||||||| || |||||||||||||||||| ||||||||||    
T  38061590 ttgatgaaagaaaagtttccagaacttggtttggttagagaagattgtattga 38061538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 38058570 - 38058916
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactg 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| || | ||    
T  38058570 ttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagttccatcaattgtgacagtcttcaatg 38058669  T
Q  105 ttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaatattgtctggca 204  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||| | ||||||||||  |||  || | | || |||  ||    
T  38058670 ttccaaaaacattggaacacaatgcaacaaagcttattcacaagtggcagtttttgacaagtagaattgatgaaaacttagaaattactgttatcttaca 38058769  T
Q  205 aagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggaggtgtagataaactcataccc 304  Q
    |||||      |||||||||||| ||| ||  ||||||| ||| | |||| || | |||||||||| |||||||||||||| |||||||| ||||||| |    
T  38058770 aaggg------taaattcaagtataaaggggaagtcaaaatcaacagtacaagctatatttcaagccttgtttcttggaggagtagataagctcatacac 38058863  T
Q  305 ttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattga 357  Q
    ||| | |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  38058864 ttgatgcaagagaagtttcctgagcttggtttggttagagaagattgtgttga 38058916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 38081983 - 38082326
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactg 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| |||  ||||| |||||||| |    
T  38081983 ttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttccagcaacagtgacggtgtttacag 38082082  T
Q  105 ttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaatattgtctggca 204  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||| ||||||||||  ||    
T  38082083 ttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattgtctttca 38082182  T
Q  205 aagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggaggtgtagataaactcataccc 304  Q
    ||||       ||||||||||||||||||| ||| |||      |  | |||| | |||||||||| ||||||||||||||||||||||||||||| |||    
T  38082183 aagg------ataaattcaagtaaaaaaggcgagacaa------caattctagctatatttcaagccttgtttcttggaggtgtagataaactcattccc 38082270  T
Q  305 ttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaat 360  Q
    ||| |  |  | |||||||||||| | ||| |||| |||||| |||||||||||||    
T  38082271 ttgatggatcaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaat 38082326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 221 - 346
Target Start/End: Original strand, 38077976 - 38078102
Alignment:
Q  221 tcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttctt-ggaggtgtagataaactcatacccttggttcaagagaag 319  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||| |||| |||||| || |||||||||||| ||||||| |||||| | |||||||||    
T  38077976 tcaagtaaaaaaggtgagtcaaagtcaacagtactagctttattttaagccttgtttttttggaggtgtagatgaactcatgcccttgatgcaagagaag 38078075  T
Q  320 tttcctgagcttggtttggttagagaa 346  Q
    |||||||||||||||||||||||||||    
T  38078076 tttcctgagcttggtttggttagagaa 38078102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 37954490 - 37954571
Alignment:
Q  272 ttgtttcttggaggtgtagataaactcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgta 353  Q
    |||||||||||||||||||||  ||| || |||||| |  ||||| ||||||| ||||||||||||||||||||| ||||||    
T  37954490 ttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgta 37954571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 38090804 - 38090865
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaa 66  Q
    ||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||    
T  38090804 ttttgggctattagaggtggtggtggagctagttttggtgttattgtttcttggaagattaa 38090865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 36080196 - 36080264
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgtt 73  Q
    ||||||||||| || |||||||| || |||||||||||||||||  ||  |||||||||||||||||||    
T  36080196 ttttgggctataaggggtggtggtggtgcaagttttggtgtcattcttaaatggaagattaaacttgtt 36080264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 37954232 - 37954321
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgaca 94  Q
    ||||||||||||||||| |||||||||||||| ||||| || ||  |  |||||||| | ||||| ||| | |||||||||| |||||||    
T  37954232 ttttgggctattagaggaggtggaggagcaagctttggagttatcatagcatggaaggtaaaactagttcatgttccatcaactgtgaca 37954321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 38125638 - 38125675
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttgg 42  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  38125638 ttttgggctattagaggaggtggaggagcaagttttgg 38125675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 38129591 - 38129628
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttgg 42  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  38129591 ttttgggctattagaggaggtggaggagcaagttttgg 38129628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 34971587 - 34971530
Alignment:
Q  3 tcttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaa 60  Q
    ||||||||||||| ||||||||||| || || ||||||||||| ||  ||||||||||    
T  34971587 tcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttcatggaa 34971530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 7001540 - 7001405
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactg 104  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||| || | |||||||||| | |     
T  7001540 ttttgagctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtatgacagtgttgaatt 7001441  T
Q  105 ttccaaaaacattggaacaaaatgcaacaaagcttg 140  Q
    | |||||||||||||| |||||||||||||||||||    
T  7001440 tgccaaaaacattggatcaaaatgcaacaaagcttg 7001405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 10792936 - 10793015
Alignment:
Q  110 aaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccat 189  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||  || || |||||| | |||||| ||| ||||||||    
T  10792936 aaaacattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccat 10793015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 10792886 - 10792923
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttgg 42  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  10792886 ttttgagctattagaggaggtggaggagcaagttttgg 10792923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 34268699 - 34268620
Alignment:
Q  110 aaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccat 189  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||  || || |||||| | |||||| ||| ||||||||    
T  34268699 aaaacattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccat 34268620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 34268749 - 34268712
Alignment:
Q  5 ttttgggctattagaggtggtggaggagcaagttttgg 42  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  34268749 ttttgagctattagaggaggtggaggagcaagttttgg 34268712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 11787062 - 11787021
Alignment:
Q  2 ttcttttgggctattagaggtggtggaggagcaagttttggt 43  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  11787062 ttcttttgggctattagaggtggtggaggtggaagttttggt 11787021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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