View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19683_low_5 (Length: 330)
Name: NF19683_low_5
Description: NF19683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19683_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 38086914 - 38087223
Alignment:
| Q |
1 |
catatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatggatacaatttcagagtctgaaattcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
38086914 |
catatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatatggtggcaaaatggatactatttcagagtctgaaattcca |
38087013 |
T |
|
| Q |
101 |
tttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
38087014 |
tttcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaaacactgcacattaattggattagaa |
38087113 |
T |
|
| Q |
201 |
aactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggggtgaataacattaatggata |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
38087114 |
aactgtatagttatatggaaccttttgttacaaagtctccgagagctgcatatattaattacagagaccttgatattggtgtgaataacattaatgggta |
38087213 |
T |
|
| Q |
301 |
cacgagctat |
310 |
Q |
| |
|
||| |||||| |
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|
| T |
38087214 |
cacaagctat |
38087223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 3 - 309
Target Start/End: Original strand, 38073406 - 38073712
Alignment:
| Q |
3 |
tatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatggatacaatttcagagtctgaaattccatt |
102 |
Q |
| |
|
|||||||||| ||||||||||| ||| | |||||| | | ||| ||| |||||| || ||||||| |||||||| |||||||| |||||||||||||| |
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| T |
38073406 |
tatggcctttgtttgatgaagatggtgcggaagatgtactaatggtattgtttccttatggtggcataatggataagatttcagaatctgaaattccatt |
38073505 |
T |
|
| Q |
103 |
tcctcatagaagtggaaacttattcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaaaa |
202 |
Q |
| |
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||| |||||| ||||| ||||| || |||||||| | || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38073506 |
tccacatagatatggaaccttatacaaaattcaatatgcagtgcactggcatcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaaaa |
38073605 |
T |
|
| Q |
203 |
ctttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggggtgaataacattaatggataca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38073606 |
ctttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggggtgaataacattaatggataca |
38073705 |
T |
|
| Q |
303 |
cgagcta |
309 |
Q |
| |
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| ||||| |
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|
| T |
38073706 |
caagcta |
38073712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 38082487 - 38082794
Alignment:
| Q |
2 |
atatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatggatacaatttcagagtctgaaattccat |
101 |
Q |
| |
|
|||||| |||| ||| ||||||| ||| |||||| ||||||||||||||||||||| || ||||| | ||||||||| |||||||||||||||||||||| |
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|
| T |
38082487 |
atatggtctttgtttcatgaagaaggtgccaaaggtgcaatgatgatatggtttccttatggtggaataatggatactatttcagagtctgaaattccat |
38082586 |
T |
|
| Q |
102 |
ttcctcatagaagtggaaacttat-tcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaa |
200 |
Q |
| |
|
|||| ||||||| ||||| |||| |||| ||||| ||| |||| ||||||| || |||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
38082587 |
ttccacatagaaaaggaaatttatatcat-attcattaccaggttgattggcaacaggaaggtgatgaggtggaaaaactgcacattaattggattagaa |
38082685 |
T |
|
| Q |
201 |
aactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggggtgaataacattaatggata |
300 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
38082686 |
aactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagaccttgatattggtgtgaataacattgatggata |
38082785 |
T |
|
| Q |
301 |
cacgagcta |
309 |
Q |
| |
|
||| ||||| |
|
|
| T |
38082786 |
cacaagcta |
38082794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 38059071 - 38059378
Alignment:
| Q |
2 |
atatggcctttatttgatgaagagggttccaaagatgcaatgatgatatggtttccatacggtggcaaaatggatacaatttcagagtctgaaattccat |
101 |
Q |
| |
|
||||||||| | ||| ||||||| ||| |||||||||| ||| ||||||| ||||| || ||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
38059071 |
atatggcctatgtttcatgaagatggtgccaaagatgccatggtgatatgttttccttatggtggcataatggataatatttcagagtctgaaattccat |
38059170 |
T |
|
| Q |
102 |
ttcctcatagaagtggaaacttat-tcatgattcaatactcggttcattggcatcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaa |
200 |
Q |
| |
|
|||| || ||| |||||| |||| ||| ||| | ||||| |||||||||||||||||| |||||||||| ||||| || | || ||||||||| ||| |
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|
| T |
38059171 |
ttccacacagacatggaaatttatatcaa-atttattactcagttcattggcatcaagaaagtgatgaggtagaaaaaatgaaaatgaattggattggaa |
38059269 |
T |
|
| Q |
201 |
aactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggggtgaataacattaatggata |
300 |
Q |
| |
|
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
38059270 |
aattgtacagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaactatagagatcttgatattggggtgaataatattaatggata |
38059369 |
T |
|
| Q |
301 |
cacgagcta |
309 |
Q |
| |
|
||| ||||| |
|
|
| T |
38059370 |
cacaagcta |
38059378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 53 - 309
Target Start/End: Complemental strand, 38061332 - 38061076
Alignment:
| Q |
53 |
tttccatacggtggcaaaatggatacaatttcagagtctgaaattccatttcctcatagaagtggaaacttattcatgattcaatactcggttcattggc |
152 |
Q |
| |
|
||||| || ||||||| |||| ||| |||||||||||| ||||||||||||| |||||| |||||| |||| | ||| |||||||||||||||| |
|
|
| T |
38061332 |
tttccttatggtggcataatgaataatatttcagagtctaaaattccatttccacatagatatggaaatttataccaaattttgtactcggttcattggc |
38061233 |
T |
|
| Q |
153 |
atcaagaaggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcata |
252 |
Q |
| |
|
|||||||| |||||||||||||||| | | || ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
38061232 |
atcaagaaagtgatgaggtggaaaaaattaaaatgaattggattagaaaactgtatagttttatggaaccttttgtttcaaagtcaccaagagctgcata |
38061133 |
T |
|
| Q |
253 |
tattaattatagagaccttgatattggggtgaataacattaatggatacacgagcta |
309 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
38061132 |
tatcaattatagagatcttgatattggggtgaataataacaatggatacacaagcta |
38061076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 158 - 310
Target Start/End: Original strand, 37954898 - 37955050
Alignment:
| Q |
158 |
gaaggtgatgaggtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatatta |
257 |
Q |
| |
|
||||||||| |||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | | |
|
|
| T |
37954898 |
gaaggtgataaggtagaaaaaaggcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtga |
37954997 |
T |
|
| Q |
258 |
attatagagaccttgatattggggtgaataacattaatggatacacgagctat |
310 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||||||||||| |||||| |
|
|
| T |
37954998 |
attatagagaccttgacattggggtgaataataacaatggatacacaagctat |
37955050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 38078145 - 38078205
Alignment:
| Q |
52 |
gtttccatacggtggcaaaatggatacaatttcagagtctgaaattccatttcctcataga |
112 |
Q |
| |
|
|||||| || ||||||| |||||||| |||||||| | ||||||||||||||| |||||| |
|
|
| T |
38078145 |
gtttccttatggtggcataatggataatatttcagaatttgaaattccatttccacataga |
38078205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 2197404 - 2197458
Alignment:
| Q |
199 |
aaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatat |
253 |
Q |
| |
|
|||||||||||| || ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
2197404 |
aaaactttatagatacatgactccttatgtttcaaagtctccaagagctgcatat |
2197458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 2153227 - 2153259
Alignment:
| Q |
221 |
ccttttgtttcaaagtctccaagagctgcatat |
253 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
2153227 |
ccttatgtttcaaagtctccaagagctgcatat |
2153259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 2176886 - 2176918
Alignment:
| Q |
221 |
ccttttgtttcaaagtctccaagagctgcatat |
253 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
2176886 |
ccttatgtttcaaagtctccaagagctgcatat |
2176918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 2184841 - 2184873
Alignment:
| Q |
221 |
ccttttgtttcaaagtctccaagagctgcatat |
253 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
2184841 |
ccttatgtttcaaagtctccaagagctgcatat |
2184873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 11822024 - 11822102
Alignment:
| Q |
202 |
actttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggg |
280 |
Q |
| |
|
|||||||||||| ||| ||||| ||| |||||| ||| ||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
11822024 |
actttatagttacatgacaccttatgtgtcaaagaatcctagaagtgcttatataaattatagagaccttgatattggg |
11822102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 11834340 - 11834262
Alignment:
| Q |
202 |
actttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagaccttgatattggg |
280 |
Q |
| |
|
|||| ||||||| ||| ||||||||| |||||| ||| ||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
11834340 |
acttcatagttacatgacaccttttgtgtcaaagaatcctagaagtgcttatataaattatagagaccttgatattggg |
11834262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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