View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19684_high_2 (Length: 327)
Name: NF19684_high_2
Description: NF19684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19684_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 102 - 312
Target Start/End: Complemental strand, 42193635 - 42193425
Alignment:
| Q |
102 |
cagcaggcagaaaccagctgctgcaccagtggaacacttgcccagcaaaaccctcaaaacaaccctatctaagaaggaaaatcttaagatgccaagtcca |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193635 |
cagcaggcagaaaccagcggctgcaccagtggaacacttgcccagcaaaaccctcaaaacaaccctatctaagaaggaaaatcttaagatgccaagtcca |
42193536 |
T |
|
| Q |
202 |
ctcgtagaagagacacgatagaattttcaacctttgtaagctccattgccaagacaacacttttatctcctccaccaactcatcaagacaacactttctc |
301 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42193535 |
ctcatagaagagacacgatggaattttcaacctttgtaagctccattgccaagacaacacttttatctcctccaccaactcatcaagacaacactttctc |
42193436 |
T |
|
| Q |
302 |
atttctttaat |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
42193435 |
atttctttaat |
42193425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 31552667 - 31552751
Alignment:
| Q |
102 |
cagcaggcagaaaccagctgctgcaccagtggaacacttgcccagcaaaaccctcaaaacaaccctatctaagaaggaaaatctta |
187 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||| ||| |||||| |||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
31552667 |
cagcaggcagaaaccagctgcaacaccaggagaacaca-gccaagcaaacccctaaaaaccaccctatctaagaaggcaaatctta |
31552751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 15472566 - 15472651
Alignment:
| Q |
201 |
actcgtagaagagacacgatagaattttcaacctttgtaagctccattgccaagacaacacttttatctcctccaccaactcatcaa |
287 |
Q |
| |
|
|||||| |||||| || ||| ||| ||||| ||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
15472566 |
actcgttgaagaggcaagatgcaatcttcaatcttgttaagctccaatgccaagacaa-actttaatctcctccactaactcatcaa |
15472651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 15510228 - 15510143
Alignment:
| Q |
201 |
actcgtagaagagacacgatagaattttcaacctttgtaagctccattgccaagacaacacttttatctcctccaccaactcatcaa |
287 |
Q |
| |
|
|||||| |||||| || ||| ||| ||||| ||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
15510228 |
actcgttgaagaggcaagatgcaatcttcaatcttgttaagctccaatgccaagacaa-actttaatctcctccactaactcatcaa |
15510143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 8170594 - 8170659
Alignment:
| Q |
193 |
ccaagtccactcgtagaagagacacgatagaattttcaacctttgtaagctccattgccaagacaa |
258 |
Q |
| |
|
|||| |||||||||||||||| || | | |||| |||||||| | |||||||||||||||||||| |
|
|
| T |
8170594 |
ccaactccactcgtagaagaggcaagttggaatcttcaacctattcaagctccattgccaagacaa |
8170659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University