View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19684_high_3 (Length: 247)
Name: NF19684_high_3
Description: NF19684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19684_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24760833 - 24760594
Alignment:
| Q |
1 |
tttagataattattagtctaatggattttcaaaagtaagaatggaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24760833 |
tttagataattattagtctaatggattttcaaaagtaagaatggaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgtta |
24760734 |
T |
|
| Q |
101 |
gtacaaaaattttaaaaatttagtatagagttattttaaaacccacaatcagataacagagagtttaaaacccaacaccaacattcaaaattatggtagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24760733 |
gtacaaaaattttaaaaatttagtatagagttattttaaaacccacaatcagataacagagagtttaaaatccaacaccaacattcaaaattatggtagt |
24760634 |
T |
|
| Q |
201 |
ggttttgattttgtttctaaaacccctgcttcatcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24760633 |
ggttttgattttgtttctaaaacccctgcttcatcctatg |
24760594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 52128268 - 52128029
Alignment:
| Q |
1 |
tttagataattattagtctaatggattttcaaaagtaagaatggaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52128268 |
tttagataattattagtctaatggattttcaaaagtaagaatggaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgtta |
52128169 |
T |
|
| Q |
101 |
gtacaaaaattttaaaaatttagtatagagttattttaaaacccacaatcagataacagagagtttaaaacccaacaccaacattcaaaattatggtagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52128168 |
gtacaaaaattttaaaaatttagtatagagttattttaaaacccacaatcagataacagagagtttaaaatccaacaccaacattcaaaattatggtagt |
52128069 |
T |
|
| Q |
201 |
ggttttgattttgtttctaaaacccctgcttcatcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
52128068 |
ggttttgattttgtttctaaaacccctgcttcatcctatg |
52128029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 4160292 - 4160451
Alignment:
| Q |
10 |
ttattagtctaatggattttcaaaagtaagaatggaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgttagtacaaaaa |
109 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
4160292 |
ttattagtctaatggattttaaaaagtaagaatggtagaactaagaatccctcaagttctcattgtcattgagagaatatacaatatgttagtacaaaaa |
4160391 |
T |
|
| Q |
110 |
ttttaaaaat-ttagtatagagttattttaaaacccacaatcagataacagagagtttaaaa |
170 |
Q |
| |
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|| ||||| ||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4160392 |
attaaaaaaaatta--ataaagttattttaaaacccataatcagataacagagagtttaaaa |
4160451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 3004023 - 3003920
Alignment:
| Q |
10 |
ttattagtctaatggattttcaaaagtaagaatggaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgttagtacaaaaa |
109 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3004023 |
ttattagtctaatggattttaaaaagtaaaaatggcagaactaagaatccctcaagttctcattgttattgagagaatatataatatgttagtacataaa |
3003924 |
T |
|
| Q |
110 |
tttt |
113 |
Q |
| |
|
|||| |
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|
| T |
3003923 |
tttt |
3003920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 54654082 - 54653973
Alignment:
| Q |
10 |
ttattagtctaatggattttcaaaagtaagaa-tggaagaactaagaatccctcgagttctcattgttattgagagaatatataatatgttagtacaaaa |
108 |
Q |
| |
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||||||||||||||||||| |||| || || || |||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
54654082 |
ttattagtctaatggatttaaaaaaaaaaaaaatgtcagaactaaaaatccctcaagttctcattgttatcgagagaatatataatatgttagtacataa |
54653983 |
T |
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| Q |
109 |
attttaaaaa |
118 |
Q |
| |
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|||||||||| |
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|
| T |
54653982 |
attttaaaaa |
54653973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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