View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19684_low_1 (Length: 381)
Name: NF19684_low_1
Description: NF19684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19684_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 24760954 - 24761319
Alignment:
| Q |
1 |
atcacttacttctcatttgccacagttcatacatcaataccttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24760954 |
atcacttacttctcatttgccacagttcatacatcaatagcttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtt |
24761053 |
T |
|
| Q |
101 |
tgttaaggcaattagagtttacctgtttctgccattagcactatcaatcattgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24761054 |
tgttaaggcaattagagtttacctgtttctgccattagcactatcaatcatcgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgata |
24761153 |
T |
|
| Q |
201 |
atttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccaatcccatttgtgtttctcagttggtgttctttgtgtttagtgatcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24761154 |
atttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccgatcccatttgtgtttctcagttggtgttctttgtgtttagtggtcaaa |
24761253 |
T |
|
| Q |
301 |
tgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24761254 |
tgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
24761319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 190 - 366
Target Start/End: Original strand, 24761512 - 24761688
Alignment:
| Q |
190 |
ttatcgtgataatttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccaatcccatttgtgtttctcagttggtgttctttgtgtt |
289 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24761512 |
ttatcgtaataatttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccaatcccatttgtgtttctcagttggtgttctttgtgtt |
24761611 |
T |
|
| Q |
290 |
tagtgatcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
366 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24761612 |
tagtggtcaagtgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
24761688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 52128389 - 52128754
Alignment:
| Q |
1 |
atcacttacttctcatttgccacagttcatacatcaataccttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128389 |
atcacttacttctcatttgccacagttcatacatcaatagcttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggtt |
52128488 |
T |
|
| Q |
101 |
tgttaaggcaattagagtttacctgtttctgccattagcactatcaatcattgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128489 |
tgttaaggcaattagagtttacctgtttctgccattagcactatcaatcatcgtttaattttatctctcaaagtataaattcgtgcatcttatcgtgata |
52128588 |
T |
|
| Q |
201 |
atttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccaatcccatttgtgtttctcagttggtgttctttgtgtttagtgatcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
52128589 |
atttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccgatcccatttgtgtttctcagttggtgttctttgtgtttagtggtcaaa |
52128688 |
T |
|
| Q |
301 |
tgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52128689 |
tgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
52128754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 190 - 366
Target Start/End: Original strand, 52128947 - 52129123
Alignment:
| Q |
190 |
ttatcgtgataatttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccaatcccatttgtgtttctcagttggtgttctttgtgtt |
289 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52128947 |
ttatcgtaataatttattcataaaaaatcagtatagtttatttgctaattatgtttgtttccaatcccatttgtgtttctcagttggtgttctttgtgtt |
52129046 |
T |
|
| Q |
290 |
tagtgatcaaatgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
366 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52129047 |
tagtggtcaagtgtgaatagttttaagggatgctaaattctttcaaaaggttttagttttggatatggaaaattagt |
52129123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 4160160 - 4160025
Alignment:
| Q |
1 |
atcacttacttctcatttgccacagttcatacatcaat-accttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggt |
99 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
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|
| T |
4160160 |
atcacttgcttctcatttgccacatttcatacatcaatgagcttctttaaatacttcagcttaaccatgttgatcattgcttctatttgctacttctggt |
4160061 |
T |
|
| Q |
100 |
ttgttaaggcaattagagtttacctgtttctgccat |
135 |
Q |
| |
|
||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
4160060 |
ttgttaaagcaattatagtttacctgtttccgccat |
4160025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 54654202 - 54654301
Alignment:
| Q |
1 |
atcacttacttctcatttgccacagttcatacatcaat-accttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggt |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54654202 |
atcacttacttctcatttgccagagttcatacatcaatgagcttcttttaatacttcagcttaaccatattgatcactgcttctatttgctacttctggt |
54654301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 54654309 - 54654356
Alignment:
| Q |
214 |
aaatcagtatagtttatttgctaattatgtttgtttccaatcccattt |
261 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
54654309 |
aaatcagtgtagtttatttgctaattatatttgtttcaaatcccattt |
54654356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 54654383 - 54654425
Alignment:
| Q |
257 |
catttgtgtttctcagttggtgttctttgtgtttagtgatcaa |
299 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
54654383 |
catttgtgtttttcagttggcgttctttgtgtttagtggtcaa |
54654425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3004155 - 3004254
Alignment:
| Q |
1 |
atcacttacttctcatttgccacagttcatacatcaat-accttcttttaatacttcagcttaaccatattgatcactgcttctatttgtcacttctggt |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
3004155 |
atcacctacttctcatttgccacagttcatacatcaatgagcttcttttaatacttcagcttaatcatattgatcactgcttctatttgctacttctggt |
3004254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 3004262 - 3004309
Alignment:
| Q |
214 |
aaatcagtatagtttatttgctaattatgtttgtttccaatcccattt |
261 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3004262 |
aaatcagtgtagtttatttgctaattatgtttgtttccaatcccattt |
3004309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 3004336 - 3004378
Alignment:
| Q |
257 |
catttgtgtttctcagttggtgttctttgtgtttagtgatcaa |
299 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
3004336 |
catttgtgtttttcagttggcgttctttgtgtttagtggtcaa |
3004378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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