View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_high_1 (Length: 785)
Name: NF19685_high_1
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 3 - 632
Target Start/End: Complemental strand, 35029875 - 35029251
Alignment:
| Q |
3 |
attcactttgtctatatcatcatcatattcatataataataatgtctgtcataggttcttttctttccctaccttcccaaatcaccggcttaactgcaca |
102 |
Q |
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| T |
35029875 |
attcactttgtctatatcatcatcatattcatataataataatgtctgtcataggttcttttctttccctaccttcccaaatcaccggcttaactgcaca |
35029776 |
T |
|
| Q |
103 |
catgttcacaacatggctgttttgatttgatcatgttgtgttagaatcttattggtgtaatataacaaacaacattatttgggtcagtgtccactctttt |
202 |
Q |
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| T |
35029775 |
catgttcacaacatggctgttttgat-----catgttgtgttagaatcttattggtgtaatataacaaacaacattatttgggtcagtgtccactctttt |
35029681 |
T |
|
| Q |
203 |
tcttccaccttaatttgtttagagctattaatgttgtttgcaactgtgcctggtgattgtgatgtgaagccatgtgtttaggactagaagcttttatgag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35029680 |
tcttccaccttaatttgtttagagctattaatgttgtttgcaactgtgcctggtgattgtgatgtgaagccatgtgtttaggactagaagcttttatgag |
35029581 |
T |
|
| Q |
303 |
ttttgttatgaacaatgaccaagtttctctaaaatttcaggacacaccttggatttcttgaagcaagtttttggtgttatttgaattggatcctaaagat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35029580 |
ttttgttatgaacaatgaccaagtttctctaaaatttcaggacacactttggatttcttgaagcaagtttttggtgttatttgaattggatcttaaagat |
35029481 |
T |
|
| Q |
403 |
agattaatcttggagtgttattatgtctgcatatggccatgagcatatgtattctacaaggagtctctcagctggttctggtatgatcaacaattattat |
502 |
Q |
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| T |
35029480 |
agattaatcttggagtgttattatgtctgcatatggccatgagcatatgtattctacaaggagtctctcagctggttctggtatgatcaacaattattat |
35029381 |
T |
|
| Q |
503 |
cacctatatggtagaatctgctcattaacgattcatcgttttagtccttgaaattgtaggggacgaggaattccatagtctaaatcaatgaaattgaaaa |
602 |
Q |
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| T |
35029380 |
cacctatatggtagaatctgctcattaacgattcatcgttttagtccttgaaattgtaggggacgaggaattccatcgtctaaatcaatgaaattgaaaa |
35029281 |
T |
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| Q |
603 |
ttcttgattgtattggttattttggatcag |
632 |
Q |
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| T |
35029280 |
ttcttgattgtattagttattttggatcag |
35029251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 657 - 768
Target Start/End: Complemental strand, 35029252 - 35029141
Alignment:
| Q |
657 |
agaaaaaagactagtgtgatcgagaattttcatattcaaaagtcattttggagacctgccctattgttttaaggactaaattaatgatgcactcgttctt |
756 |
Q |
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| T |
35029252 |
agaaaaaagactagtgtgatcgagaattttcatattcaaaagtcattttggagacctgccctattgttttaaggaataaattaatgatgcactcgttctt |
35029153 |
T |
|
| Q |
757 |
aatcacactatt |
768 |
Q |
| |
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|||||||||||| |
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| T |
35029152 |
aatcacactatt |
35029141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 340 - 764
Target Start/End: Original strand, 36860251 - 36860680
Alignment:
| Q |
340 |
caggacacaccttggatttcttgaagcaagtttttgg--tgttatttgaattggatcctaaagatagattaatcttggagtgttattatgtctgcatatg |
437 |
Q |
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|||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||| |
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| T |
36860251 |
caggacacaccttggattacttgaagtaagttttaagcttgttatttgaattggatcctaa---taaattaagcttggagtgttattatgtctgcttatg |
36860347 |
T |
|
| Q |
438 |
gccatgagcatatgtattctacaaggagtctctcagctggttctggtatga------tcaacaattattatcacctatatggtagaatctgctcattaac |
531 |
Q |
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| T |
36860348 |
gccatgagcatatgtattctacaaggagtctctcagctggttctggtatgaatatgatcaacaattattatcacctatatggtagattctgctcattaac |
36860447 |
T |
|
| Q |
532 |
gattcatcgttttagtccttgaaattgtaggggacgaggaattccatagtctaaatcaatgaaattgaaaattcttgattgtattggttattttggatca |
631 |
Q |
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| |||||||||||||| |||||||||||||||||||||||| || | | ||| ||||||||||||||||||| | || || | || ||||||||||| |
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| T |
36860448 |
ggttcatcgttttagttcttgaaattgtaggggacgaggaactctgtcgcctatatcaatgaaattgaaaattttcaatcatactagtcattttggatca |
36860547 |
T |
|
| Q |
632 |
gtcaatatagccgactaactgatctagaaaaaagactagtgtgatcgagaattttcatattcaaaagtcattttggagacctgccctattgttttaagga |
731 |
Q |
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| T |
36860548 |
gtcaatatagccgactaactgatctagaaaaaagactagcgtggtcgagaattttcatattcaaaagtcattttggagacctgccctatagttttaagga |
36860647 |
T |
|
| Q |
732 |
ctaaattaatgatgcactcgttcttaatcacac |
764 |
Q |
| |
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||||||||||||| |||||||||||||||||| |
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| T |
36860648 |
ctaaattaatgatttactcgttcttaatcacac |
36860680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 36859983 - 36860186
Alignment:
| Q |
36 |
taataataatgtctgtcataggt--tcttttctttccctaccttcccaaatcaccggcttaact-gcacacatgttcacaacatggctgttttgatttga |
132 |
Q |
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|||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||| | |
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| T |
36859983 |
taataataatttctgtcctaggtgctcttttctttccctaccttcccaaatcacaggcttaacttgcacacatgctcacaacatggttgttttgct---- |
36860078 |
T |
|
| Q |
133 |
tcatgttgtgttagaatcttattggtgtaatataacaaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagctatta |
232 |
Q |
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| T |
36860079 |
-catgttgtgttagaatcttatcggtgtaatataacaaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagcaatta |
36860177 |
T |
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| Q |
233 |
atgttgttt |
241 |
Q |
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||||||||| |
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| T |
36860178 |
atgttgttt |
36860186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 708
Target Start/End: Original strand, 1179180 - 1179226
Alignment:
| Q |
662 |
aaagactagtgtgatcgagaattttcatattcaaaagtcattttgga |
708 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| || |||||||||| |
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| T |
1179180 |
aaagactagtgtgatcaagaattttcttattcagaaatcattttgga |
1179226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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