View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_high_4 (Length: 441)
Name: NF19685_high_4
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 38235623 - 38235981
Alignment:
| Q |
1 |
agtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcggcgggagagagcgacggcgacccaaatccccggcgagggtaccgg |
100 |
Q |
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| T |
38235623 |
agtcactccgatgcatcaaggaatcgttcttacaatgctgacaggaatagagtcggcgggagagagcgacggcgacccaaatccccggcgagggtaccgg |
38235722 |
T |
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| Q |
101 |
agattccaccagagaagaaaattgtggcgggttcacggtctgtttgtcggagggaattttccgataagctccggcgtgactccggcacgggtgtttgccg |
200 |
Q |
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| T |
38235723 |
agattccaccggagaagaaaattgtggcgggttcacggtctgtttgtcggagggaattttccgataagctccggcgtgactccggcacgggtgtttgccg |
38235822 |
T |
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| Q |
201 |
gcgttcaaggtcgccgtcgtgccacaggacggctggcagcagcaatggtcggagtgagctcaggcagacggaaaaggacggtcggcggtttccgccgacg |
300 |
Q |
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| T |
38235823 |
gcgttcaaggtcgccgtcgtgccacaggacggctggcagcagcaatggtcggagtgagctcaggcagacggaaaaggacggccggcggtttccgccgacg |
38235922 |
T |
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| Q |
301 |
gaggtggtcggggacacaaacgacggcgtttcagtggaggagtcatttacgaatccgca |
359 |
Q |
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| T |
38235923 |
gaggtggtcggggacacaaacgacggcgtttcagtggaggagtcatttacgaatccgca |
38235981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 37609982 - 37610133
Alignment:
| Q |
11 |
atgcatcaaggaatcgttcttacaatgctgacaggaatagagtcggcgggagagagcgacggcgacccaaatccccggcgagggtaccggagattccacc |
110 |
Q |
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| T |
37609982 |
atgcatcaaggaatcgttcttacaaagctgacaggaatatagtcggtgggagagagcgacgacgacccaaattatcggcgtgggtactggagattccacg |
37610081 |
T |
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| Q |
111 |
agagaagaaaattgtggcgggttcacggtctgtttgtcggagggaattttcc |
162 |
Q |
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| T |
37610082 |
ggagaagaaagttgtggttggttcagggtcggttcgtcagagggagttttcc |
37610133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 38644125 - 38644211
Alignment:
| Q |
244 |
aatggtcggagtgagctcaggcagacggaaaaggacggtcggcggtttccgccgacggaggtggtcggggacacaaacgacggcgtt |
330 |
Q |
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| T |
38644125 |
aatggtcggagtgagcttaggtagacgaaaagggacggtcggtggtttccaccgccggaggttgttggggacacaaacgacggcgtt |
38644211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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