View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_high_5 (Length: 418)
Name: NF19685_high_5
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 20170849 - 20170481
Alignment:
| Q |
17 |
aatctaaagtggttcatgaaaaacaggatacccnnnnnnnatcgtttctaaaatcattgactttttatgattaaagtaattaactatgtaatattagact |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170849 |
aatctaaagtggttcatgaaaaacaggataccctttttttatcgtttttaaaatcattgactttttatgattaaagtaattaactatgtaatattagact |
20170750 |
T |
|
| Q |
117 |
agctgaggttgcttttgatgtaaacaaggaatgattcaaagttatagttttaaaaagcatttagacaaactgatattattttatcaattatgtgaggtac |
216 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20170749 |
agatgaggttgcttttgatgtaaacaaggaatgattcaaagttatagttttaaaaagcatttagacaaactgatattattttatcaatcatgtgaggtac |
20170650 |
T |
|
| Q |
217 |
agaaattgttctcattctcatagatctgagaggatacaagttgatacgataatgtagtaaaaatgaaataactgttgatcatatactactcatcttcctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170649 |
agaaattgttctcattctcatagatctgagaggatacaagttgatacgataatgtagtaaaaatgaaataactgttgatcatatactactcatcttcctt |
20170550 |
T |
|
| Q |
317 |
atggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacatgttagtgttggtatagacac |
402 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20170549 |
atggatttcagcta-----------------ctgttttattcattttgtgttgctatttgctacatgttagtgttggtatagacac |
20170481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 20172842 - 20172474
Alignment:
| Q |
17 |
aatctaaagtggttcatgaaaaacaggatacccnnnnnnnatcgtttctaaaatcattgactttttatgattaaagtaattaactatgtaatattagact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20172842 |
aatctaaagtggttcatgaaaaacaggataccctttttttatcgtttttaaaatcattgactttttatgattaaagtaattaactatgtaatattagact |
20172743 |
T |
|
| Q |
117 |
agctgaggttgcttttgatgtaaacaaggaatgattcaaagttatagttttaaaaagcatttagacaaactgatattattttatcaattatgtgaggtac |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20172742 |
agatgaggttgcttttgatgtaaacaaggaatgattcaaagttatagttttaaaaagcatttagacaaactgatattattttatcaatcatgtgaggtac |
20172643 |
T |
|
| Q |
217 |
agaaattgttctcattctcatagatctgagaggatacaagttgatacgataatgtagtaaaaatgaaataactgttgatcatatactactcatcttcctt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20172642 |
agaaattgttctcattctcatagatctgagaggatacaagttgatacgataatgtagtaaaaatgaaataactgttgatcatatactactcatcttcctt |
20172543 |
T |
|
| Q |
317 |
atggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacatgttagtgttggtatagacac |
402 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20172542 |
atggatttcagcta-----------------ctgttttattcattttgtgttgctatttgctacatgttagtgttggtatagacac |
20172474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 20261768 - 20261885
Alignment:
| Q |
285 |
taactgttgatcatatactactcatcttccttatggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacatgt |
384 |
Q |
| |
|
||||| |||||| ||||||| | |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
20261768 |
taacttttgatcctatactaataatctctcttatggattttagctactgtgcatatctgttttctgttgtattcattttgtgttgctatttggtacatgt |
20261867 |
T |
|
| Q |
385 |
tagtgttggtatagacac |
402 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
20261868 |
tagtgttggtatagacac |
20261885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 20229186 - 20229302
Alignment:
| Q |
286 |
aactgttgatcatatactactcatcttccttatggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacatgtt |
385 |
Q |
| |
|
|||| |||||||||| | | | |||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
20229186 |
aacttttgatcatatgcgaataatctcccttatggatttcagctaccgtgaaaatctgttttctgttttattcattttgtgttgctatttggtacatgtt |
20229285 |
T |
|
| Q |
386 |
agtgttggtatagacac |
402 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
20229286 |
agtgttggtatagacac |
20229302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 20281375 - 20281524
Alignment:
| Q |
61 |
tttctaaaatcattgactttttatgattaaagtaattaactatgtaatattagactagctgaggttgcttttgatgtaaacaaggaatgattcaaagtta |
160 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||| ||| | |||||| ||| | ||||||||||||||||||||| || |||| | || || || |
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|
| T |
20281375 |
tttctaaaatcattgactttt-atgattaaattgattaattatttgatattaaacttgatgaggttgcttttgatgtaaaaaatgaataaatctaaattt |
20281473 |
T |
|
| Q |
161 |
tagttttaaaaagcatttagacaaactgatattattttatcaattatgtgagg |
213 |
Q |
| |
|
|| ||||||||||| |||||| | ||||||||||||||||||||||||||| |
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|
| T |
20281474 |
taaatttaaaaagca-ttagac-atgtgatattattttatcaattatgtgagg |
20281524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 20271342 - 20271447
Alignment:
| Q |
290 |
gttgatcatatactactcatcttccttatggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacatgttagtg |
389 |
Q |
| |
|
||||||||||| ||| | |||| ||| ||| |||||| | ||||||||||| |||| ||||||||||||||||||| ||||||||| ||| |||||||| |
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|
| T |
20271342 |
gttgatcatatgctattaatctccctaatgaatttcaccaactgtgcatatttgttctctgttttattcattttgttttgctattttctaaatgttagta |
20271441 |
T |
|
| Q |
390 |
ttggta |
395 |
Q |
| |
|
|||||| |
|
|
| T |
20271442 |
ttggta |
20271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 403
Target Start/End: Original strand, 20281672 - 20281769
Alignment:
| Q |
306 |
tcatcttccttatggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacatgttagtgttggtatagacact |
403 |
Q |
| |
|
|||||| ||| ||| ||||||| | |||||||||| | | ||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||| |
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|
| T |
20281672 |
tcatctccctaatgaatttcagttgctgtgcatatttactctctgtcatattcattttgtgttgctatttactacatgttagtattggtgtagacact |
20281769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 213
Target Start/End: Original strand, 20259502 - 20259634
Alignment:
| Q |
79 |
ttttatgattaaagtaattaactatgtaatattagactagctgaggttgcttttgatgtaaacaaggaatgattcaaagttatagttttaaaaagcattt |
178 |
Q |
| |
|
||||||||||||| | |||||| || | ||||| ||||| |||||||| |||||||||||| || |||||||||||||||||| ||| |||| | || |
|
|
| T |
20259502 |
ttttatgattaaactgattaaccattttatatttaactagatgaggttgattttgatgtaaaaaataaatgattcaaagttataggttttgaaag-aatt |
20259600 |
T |
|
| Q |
179 |
agacaaactgatattattttatcaattatgtgagg |
213 |
Q |
| |
|
|||| ||||| |||||||||| | |||||||||| |
|
|
| T |
20259601 |
agac-aactggtattattttaactgttatgtgagg |
20259634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 402
Target Start/End: Original strand, 20301344 - 20301463
Alignment:
| Q |
285 |
taactgttgatcatatactac--tcatcttccttatggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacat |
382 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||| ||||||| |||| || ||||||| | |||||| |||||| ||| || ||||||| ||| | |
|
|
| T |
20301344 |
taactgttgatcatatactacgatcatctgactaatgggtttcagcagctgttcaaatctgttctttgttttgttcattctgttttcctatttgttacgt |
20301443 |
T |
|
| Q |
383 |
gttagtgttggtatagacac |
402 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
20301444 |
gttagtatcggtatagacac |
20301463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 20239842 - 20239924
Alignment:
| Q |
79 |
ttttatgattaaagtaattaactatgtaatattagactagctgaggttgcttttgatgtaaacaaggaatgattcaaagttat |
161 |
Q |
| |
|
||||||||||||| | |||||| || | ||||| ||||| |||||||| |||||||||||| || |||||||||||||||| |
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|
| T |
20239842 |
ttttatgattaaactgattaaccattttatatttaactagatgaggttgattttgatgtaaaaaataaatgattcaaagttat |
20239924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 20271004 - 20271088
Alignment:
| Q |
114 |
actagctgaggttgcttttgatgtaaacaag-gaatgattcaaagttatagttttaaaaagcatttagacaaactgatattatttta |
199 |
Q |
| |
|
||||| |||||||| |||||||||||| || ||||||||||||||||||||||| ||||| | |||||| ||||| |||||||||| |
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|
| T |
20271004 |
actagatgaggttgattttgatgtaaaaaaatgaatgattcaaagttatagtttttaaaag-aattagac-aactggtattatttta |
20271088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 20065060 - 20064943
Alignment:
| Q |
285 |
taactgttgatcatatactactcatcttccttatggatttcagctactgtgcatatctgttttctgttttattcattttgtgttgctatttgctacatgt |
384 |
Q |
| |
|
||||| || ||| |||| |||||||||| || ||| ||||||||| ||| || ||||||| | ||||| |||||| ||| || |||||| ||||||| |
|
|
| T |
20065060 |
taactcttcatcttatagtactcatcttactgatgaatttcagctcttgttcaaatctgttgttagttttgttcattgtgtttttgtatttgttacatgt |
20064961 |
T |
|
| Q |
385 |
tagtgttggtatagacac |
402 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
20064960 |
tagtatcggtatagacac |
20064943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 20093320 - 20093288
Alignment:
| Q |
145 |
gaatgattcaaagttatagttttaaaaagcatt |
177 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
20093320 |
gaatgattcaaagttatagttttagaaagcatt |
20093288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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