View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_high_9 (Length: 260)
Name: NF19685_high_9
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 25265689 - 25265803
Alignment:
| Q |
1 |
tgacctctagaaaatgacctgtcctactttcatccttagatacaaagtattactaactactttaattagtaataagtttcattaacaagtaatttctatt |
100 |
Q |
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| T |
25265689 |
tgacctctagaaaatgacctgtcctactttcatccttagatacaaagtactactaactactttaattagtaataagtttcattaacaagtaatttctatt |
25265788 |
T |
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| Q |
101 |
aagaaattcggccaa |
115 |
Q |
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| T |
25265789 |
aagaaattcggccaa |
25265803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 25265810 - 25265920
Alignment:
| Q |
142 |
aactatatttgttccatcacaacattcaaacataaattaagaaagtctaacttaactaaacttaatttaatatcctttgtcatcaagcatcaccacaact |
241 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25265810 |
aactatatttgttccatcacaacattcaaacttaaattaagaaagtctaacttaactaaacttaatttaatatcctttgtcctcaagcatcaccacaact |
25265909 |
T |
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| Q |
242 |
atagaataatc |
252 |
Q |
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||||||||||| |
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| T |
25265910 |
atagaataatc |
25265920 |
T |
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