View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_low_2 (Length: 618)
Name: NF19685_low_2
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 16 - 611
Target Start/End: Complemental strand, 3055601 - 3055006
Alignment:
| Q |
16 |
aatgaaacatgttggtattgatgataatgctttgacttctgttgcttttgggaaatttgatattgataagaatcttggtagggtatgttatgttttgatt |
115 |
Q |
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| T |
3055601 |
aatgaaacatgttggtattgatgataatgctttgacttctgttgcttttgggaaatttgatattgataagaatcttggtagggtatgttatgttttgatt |
3055502 |
T |
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| Q |
116 |
gattataattctgatgagaagatgttggaagttttttggtcttttaagggaaggtttgtgaaaggtgatggaagttatgggaattcttcaatttcttatc |
215 |
Q |
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| T |
3055501 |
gattataattctgatgagaagatgttggaagttttttggtcttttaagggaaggtttgtgaaaggtgatggaagttatgggaattcttcaatttcttatc |
3055402 |
T |
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| Q |
216 |
aaattgatcttatgaagaagttgcctgaatttgttaatattggattttcggcttcaacaggtctttctaccgaaagtaatgttattcattcgtgggagtt |
315 |
Q |
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| T |
3055401 |
aaattgatcttatgaagaagttgcctgaatttgttaatattggattttcggcttcaacaggtctttctaccgaaagtaatgttattcattcgtgggagtt |
3055302 |
T |
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| Q |
316 |
cagttcgaatctggaggattcaaactctaccacgagtttggtggagggaaatgaaggaaaagggtcgttgaaaacggttattgttgtcgtttctgtgatt |
415 |
Q |
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| T |
3055301 |
cagttcgaatctggaggattcaaactctaccacgagtttggtggagggaaatgatggaaaagggtcgttgaaaacggttattgttgtcgttgctgtgatt |
3055202 |
T |
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| Q |
416 |
gttccggttattttggtatttttgatagccagtattgttggttgggtgatagtgaagaggaaaaggaagaattgtgttgaagggcttgatgaatatggta |
515 |
Q |
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| T |
3055201 |
gttccggttattttggtatttttgatagccagtattgttggttgggtgatagtgaagaggaaaaggaagaattgtgatgaagggcttgatgaatatggta |
3055102 |
T |
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| Q |
516 |
taccatttccgaagaaatttgatttggataaagcaacaatacctagaagatttgaatatagtgaattagttgcagctactaatggttttgatgatg |
611 |
Q |
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| T |
3055101 |
taccatttccgaagaaatttgatttggataaagcaacaatacctagaagatttgaatatagtgaattagttgcagctactaatggttttgatgatg |
3055006 |
T |
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