View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_low_3 (Length: 590)
Name: NF19685_low_3
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 569
Target Start/End: Complemental strand, 15527158 - 15526610
Alignment:
| Q |
21 |
gtggttgtattcagtctagcctacttaaaagggtttcaaattatgttttatctcacaatgcccaactcaatcgactaggatttgatgttaaaggcgatat |
120 |
Q |
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||||| ||||| ||| | |||||||||||| || |||||||||||||||| |||| |||| | ||| ||||| ||| | ||||||| ||||||||||| |
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| T |
15527158 |
gtggtagtattgagtttggcctacttaaaaaagtagcaaattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgtgaaaggcgatat |
15527059 |
T |
|
| Q |
121 |
atgtcatatcttgccttgcatttcttcgtctcaaactttaacatcacttaggttgtccttttcccctaaaggtcgttataattatgggagaacgttgttt |
220 |
Q |
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|||||||||| | |||||||||||||||||||| || ||||||||||||||| | ||| |||| ||||||||||||||||||||| |||||||||||||| |
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| T |
15527058 |
atgtcatatcctaccttgcatttcttcgtctcagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattggagaacgttgttt |
15526959 |
T |
|
| Q |
221 |
cctaaatcactaaatttaccatcattaacctacttgcatctcgaaaattttgtcatttgtgctagtgacaatggccgaatcgagcccttttcagccttta |
320 |
Q |
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||||| |||||| |||||||| ||||||| | ||||| | |||||||||| |||| || | ||| ||| ||||| || |||||||||||||||| |
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| T |
15526958 |
cctaactcactagatttaccagtgttaacctgtctacatctaggaaattttgtcttttgcgccactgatggtggtcgaattgatcccttttcagccttta |
15526859 |
T |
|
| Q |
321 |
acaggttgaatgatttgatcattgataattgcacggtcaaagatgcaaaaatcttgtgcatatcaagtgagacgctagtcactttaaccatgcgtaatca |
420 |
Q |
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| || |||| ||||||||||||||||||||| |||| || | |||||| ||||||||||| | ||| |||| ||||| | ||||| || |||||||| |
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| T |
15526858 |
atagattgagtgatttgatcattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacactagttagcttaacgatacgtaatca |
15526759 |
T |
|
| Q |
421 |
ttcttttaacttctacaaaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatcagatactctgtgggagcagtctttct |
520 |
Q |
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| T |
15526758 |
ttcattccacaattaccaaatcgagctatctgctccaagccttcgtacatttgcttttacgggtactccttatcagacacttcttggaaccaatctttct |
15526659 |
T |
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| Q |
521 |
tctgtggaacaagtgatcatcgatgcggaaatgttggcaaattactcgg |
569 |
Q |
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| T |
15526658 |
tctgtcaaaaaagtaattattgacgcggaaatgttggcaaattactcgg |
15526610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 15582057 - 15581942
Alignment:
| Q |
17 |
aatggtggttgtattcagtctagcctacttaaaagggtttcaaattatgttttatctcacaatgcccaactcaatcgactaggatttgatgttaaaggcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15582057 |
aatggtggttgtattcagtctagcctacttaaaaggttttcgaattatgttttatctcacaatgcccaactcaatcgactaggatttgatgttaaaggcg |
15581958 |
T |
|
| Q |
117 |
atatatgtcatatctt |
132 |
Q |
| |
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|||||||||||||||| |
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| T |
15581957 |
atatatgtcatatctt |
15581942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 106 - 556
Target Start/End: Complemental strand, 36591204 - 36590754
Alignment:
| Q |
106 |
tgttaaaggcgatatatgtcatatcttgccttgcatttcttcgtctcaaactttaacatcacttaggttgtccttttcccctaaaggtcgttataattat |
205 |
Q |
| |
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||||||||| ||||| |||||||| ||||||| ||||||||| || |||||||| || |||| | | || |||| || ||||| | |||||||| |
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| T |
36591204 |
tgttaaaggggatatttgtcatattctgccttgtgtttcttcgtgtcggactttaacgtctcttaagctttctgtttcgcccaaagggaggcataattat |
36591105 |
T |
|
| Q |
206 |
gggagaacgttgtttcctaaatcactaaatttaccatcattaacctacttgcatctcgaaaattttgtcatttgtgctagtgacaatggccgaatcgagc |
305 |
Q |
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||||||||||||||||| |||||| | |||| ||| | |||||| |||||||| | ||||| ||| ||||||||||||| || ||||||| |||| |
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| T |
36591104 |
gggagaacgttgtttccaaaatcattggatttgccagcgttaaccagtttgcatctagggaatttcgtcttttgtgctagtgataaaggccgaactgagc |
36591005 |
T |
|
| Q |
306 |
ccttttcagcctttaacaggttgaatgatttgatcattgataattgcacggtcaaagatgcaaaaatcttgtgcatatcaagtgagacgctagtcacttt |
405 |
Q |
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||||||| | ||||||| ||||||| |||| ||||||| ||||| ||||| || ||||| | || | ||||||| ||||||||| || |||| ||| |
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| T |
36591004 |
ccttttcgggttttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaattt |
36590905 |
T |
|
| Q |
406 |
aaccatgcgtaatcattcttttaacttctacaaaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatcagatactctgt |
505 |
Q |
| |
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|| |||||||||||||||| | || | ||||||||||| ||||| |||||| |||| | || ||||| ||||| || || |||||||||| ||| ||| |
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| T |
36590904 |
gactatgcgtaatcattcttctgacgtttacaaaatcgaactatccgctccaagtcttagcacgtttgcgtttaccggaaccccttatcagaaactttgt |
36590805 |
T |
|
| Q |
506 |
gggagcagtctttcttctgtggaacaagtgatcatcgatgcggaaatgttg |
556 |
Q |
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||||||| |||||| || || |||| |||| || ||||| ||||||||| |
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| T |
36590804 |
gggagcaatctttcctcggttaaacaggtgaatattgatgcagaaatgttg |
36590754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 534
Target Start/End: Complemental strand, 36636389 - 36636308
Alignment:
| Q |
453 |
ctccaaatctttgtacatttgcttttacgggtactccttatcagatactctgtgggagcagtctttcttctgtggaacaagt |
534 |
Q |
| |
|
|||||| ||||||||| ||| ||||||| ||||||||| ||||| | | |||||||| ||||||||||||| ||||||| |
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| T |
36636389 |
ctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtgggagtggtctttcttctgtcaaacaagt |
36636308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 512
Target Start/End: Original strand, 28091695 - 28091769
Alignment:
| Q |
438 |
aaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatcagatactctgtgggagca |
512 |
Q |
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|||||||| ||||| |||||||||||||||| ||| |||||| ||| |||||| ||| | ||||| |||||||| |
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| T |
28091695 |
aaatcgagttatctactccaaatctttgtacctttacttttattggttctccttttcacaaactctatgggagca |
28091769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 13460215 - 13460277
Alignment:
| Q |
436 |
caaaatcgagctatcttctccaaatctttgtacatttgcttttacgggtactccttatcagat |
498 |
Q |
| |
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|||||| ||||||| | |||||||||| ||| ||||| |||||| ||||||||||| |||||| |
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| T |
13460215 |
caaaattgagctatttactccaaatctgtgtgcatttacttttatgggtactccttttcagat |
13460277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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