View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_low_6 (Length: 402)
Name: NF19685_low_6
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 602281 - 601920
Alignment:
| Q |
12 |
aatactatgcaaaacatcaaatttatggtta------tggttatgatatgattggtatgtagtactcttatttgcttctccttgtannnnnnnnnnaata |
105 |
Q |
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| T |
602281 |
aatactatgcaaaacatcaaatttatggttaaggttatggttatgatatgattggtatgtagtactcttatttgcttctccttgtattttttttt-aata |
602183 |
T |
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| Q |
106 |
ggtcatcaactaatcataaagacgatatgaatttctattgtcaaaacaaatcatcgattgttgtcagaattttaaacaatttttaaatatttgtccgtat |
205 |
Q |
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| T |
602182 |
ggttatcacctaaccataaagacgatatgaacttctattttcaaaacacatcatcgattgttgtcagaattttaaacaatttttaaatatttgtccgtat |
602083 |
T |
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| Q |
206 |
tgattaagtggcccctcctagctaataacttaacgacataactacaaaacgcaaataacaataatgattattagtagatatannnnnnncccatagattt |
305 |
Q |
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| T |
602082 |
tgactaagtggtccctc----ctaaaaacttaacgacataactacaaaacgcaaataacaataatgattattagtagatattttttttttccatagattt |
601987 |
T |
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| Q |
306 |
cctccacttgatgtgatcttattagagctaggttggacattaaatttgtgtacctcttcgattatga |
372 |
Q |
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| T |
601986 |
cctccacttgatgtgatcttattagagctgggttggacattaaatttgtgtacctcttggattatga |
601920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 805090 - 805016
Alignment:
| Q |
17 |
tatgcaaaacatcaaatttatggttatggttatgatatgattggtatgtagtactcttatttgcttctccttgta |
91 |
Q |
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| T |
805090 |
tatgcaaaacatcaactttttggttatggttatgataggaaagatatgtagtactctcatttgtttttccttgta |
805016 |
T |
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