View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_low_7 (Length: 351)
Name: NF19685_low_7
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 174 - 336
Target Start/End: Original strand, 5574930 - 5575092
Alignment:
| Q |
174 |
attaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttgacccacctcttttgctaaagttatcaactagcttatcaaacacaa |
273 |
Q |
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| T |
5574930 |
attaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttgatccacctcctttgctaaagttatcaactagcttatcaaacacaa |
5575029 |
T |
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| Q |
274 |
atcggatcaaacttgaggtagcagaacatattacacttattttatttaattctagtttacagt |
336 |
Q |
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| T |
5575030 |
atcggatcaaacttgaggtagcagaacatattacacttattttatttaattctagtttacagt |
5575092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 157 - 336
Target Start/End: Original strand, 5572015 - 5572194
Alignment:
| Q |
157 |
gtttattctacttagccattaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttgacccacctcttttgctaaagttatcaac |
256 |
Q |
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| T |
5572015 |
gtttattccacatatccattaacaattgtaaaaaccaacttaattatcatcattatcatccacctaactgtgagtcacctcttttgctaaagttatcaaa |
5572114 |
T |
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| Q |
257 |
tagcttatcaaacacaaatcggatcaaacttgaggtagcagaacatattacacttattttatttaattctagtttacagt |
336 |
Q |
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| T |
5572115 |
taaactatcaaacacaaatagaatcaaacataaggtggtagaaccaattgcacttatttgatttaattctagtttacagt |
5572194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 334
Target Start/End: Original strand, 5579653 - 5579831
Alignment:
| Q |
157 |
gtttattctacttagccattaacaattgtaaaaaccaactcaactatcatcattatcatccacttaaatttgacccacctcttttgctaaagttatcaac |
256 |
Q |
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| T |
5579653 |
gtttattcaacctacccattaacaattgtaaaaaccaacttaattatcatcattatcatccgcttaactgtgaatcacctcttttgctaaatttatcaac |
5579752 |
T |
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| Q |
257 |
tagcttatcaaacacaaatcgga-tcaaacttgaggtagcagaacatattacacttattttatttaattctagtttaca |
334 |
Q |
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| T |
5579753 |
taagctatcaaacacaaatttcactcaaatgtaaggcggcagaaccaattacacttatttgacttaattctagtttaca |
5579831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 5570227 - 5570285
Alignment:
| Q |
55 |
caacaaattctcatcactatttttcagctcattcatctctttggctgaataagagaagg |
113 |
Q |
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| T |
5570227 |
caacaaattctcatcactatttttcagctcattcatctctttgactgaataagagaagg |
5570285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 5579521 - 5579598
Alignment:
| Q |
37 |
tatgccataaaacttgctcaacaaattctcatcactatttttcagctcattcatctctttggctgaataagagaaggca |
115 |
Q |
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| T |
5579521 |
tatgccagaaaacatgtgcaacaatttctcatcact-tttttcagctcattcatctctttggctgactaagagaaggca |
5579598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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