View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19685_low_9 (Length: 260)
Name: NF19685_low_9
Description: NF19685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19685_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 34383120 - 34383356
Alignment:
| Q |
9 |
gattattctcgggtagcctttcacaactatgccaccatggaatggttgtctgtcagaatcaattttctcttcaatttggtattctattttgttctcgtca |
108 |
Q |
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| T |
34383120 |
gattattctcgggtagcctttcacaactatgccaccatggaatggttgtccgtcagaatcaattttctcttcaatttggtattctattttgttctcgtca |
34383219 |
T |
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| Q |
109 |
tcttggttactttgccaaggtcttccatcaatcccagtaagttcctttctcctgcgttcatcctataagcagtgatagttttttaaagttcatacatgta |
208 |
Q |
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| T |
34383220 |
tcttggttactttgccaaggtctgccatcaatcccagtaagttcctttctcctgcgttcatcctataagcagtgatagttttttaaagttcatacatgta |
34383319 |
T |
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| Q |
209 |
tgtgagagtcaatttccattagagtaattaagaaact |
245 |
Q |
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| T |
34383320 |
tgtgagagtcaatttccattagagtaattaagaaact |
34383356 |
T |
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Back To:
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 37582059 - 37582108
Alignment:
| Q |
165 |
ttcatcctataagcagtgatagttttttaaagttcatacatgtatgtgag |
214 |
Q |
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| T |
37582059 |
ttcatcctataagcagtgatagattttcaaaatttatacatgtatgtgag |
37582108 |
T |
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