View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19686_high_2 (Length: 603)
Name: NF19686_high_2
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19686_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 286 - 586
Target Start/End: Original strand, 26378955 - 26379261
Alignment:
| Q |
286 |
aataaaaaatgagaaagagaatagaaagaatataaattggcatgtttttcctccctagttttacaagcttcatggtatttcccaagcataatgtttgttc |
385 |
Q |
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| T |
26378955 |
aataaaaaatgagaaagagaataaaaagaatataaattggcatgtttttcctccctagttttacaagcttcatggtatttcccaagcataatgtttgttc |
26379054 |
T |
|
| Q |
386 |
agagataatgtttttactgcatgtggtgagatccatttgaattttatccaataaaaaagtaagtgttaaagagtgtttttagcatttctcccaaacaatt |
485 |
Q |
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| T |
26379055 |
agagataatgtttttactgcatgtggtgagatccatttgaattttatccaataaaaaagtaagtgttaaaaagtgtttttagcatttctcctaaacaatt |
26379154 |
T |
|
| Q |
486 |
aagtgattccatttcttaaatgaaatgcccaatagaatatgcagatcaagctagcatgagaaagggggtggttttac------ctcatatccctgcatct |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
26379155 |
aagtgattccatttcttaaatgaaatgcccaatagaatatgcagatcaagctagcatgaaaaagggggtggttttacttttatctcatatccctgcatct |
26379254 |
T |
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| Q |
580 |
ctacctt |
586 |
Q |
| |
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||||||| |
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| T |
26379255 |
ctacctt |
26379261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 26378655 - 26378933
Alignment:
| Q |
13 |
attcttgatgaaagatgactatgaatttaatatatatact-ctctccaattgcaatctaacagaatgctgtgaattttggcggagaaacatgatttagtt |
111 |
Q |
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| T |
26378655 |
attcttgatgaaagataactatgaatttacaatatatacttctctccaattgcaatctaacagaatgctgtgaattttggcggagaaacatgatttagtt |
26378754 |
T |
|
| Q |
112 |
gtggttccgtagatacaacgaaatcactcgtgtttcagctgtttgtccattttgttcaatgttagttcatttcggaccnnnnnnnnnnnntgttagtacg |
211 |
Q |
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| T |
26378755 |
gtggttccgtagatacaacgaaaccactcgtgtttcagctgtttgtccattttgttcaatgttagttcatttcggaccaaaaaagaaaaatgttagtacg |
26378854 |
T |
|
| Q |
212 |
ttgtattctgaacaacttatttgcatattaatattgcaatattttcatgccaattattgaaatgattcttctctaataa |
290 |
Q |
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| T |
26378855 |
ttgtattctgaacaacttatttgcatattaatattgcaatattttcatgccaattattgaaatgattcttctctaataa |
26378933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 458
Target Start/End: Complemental strand, 41840840 - 41840808
Alignment:
| Q |
426 |
attttatccaataaaaaagtaagtgttaaagag |
458 |
Q |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
41840840 |
attttatccaataaaaaagtaaatgttaaagag |
41840808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 15890783 - 15890738
Alignment:
| Q |
430 |
tatccaataaaaaagtaagtgttaaagagtgtttttagcatttctc |
475 |
Q |
| |
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| T |
15890783 |
tatccaataaaaaagtaagtgttaaagagtgttcataacatttctc |
15890738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 26329428 - 26329396
Alignment:
| Q |
425 |
aattttatccaataaaaaagtaagtgttaaaga |
457 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
26329428 |
aattttatccaataagaaagtaagtgttaaaga |
26329396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 458
Target Start/End: Original strand, 44911723 - 44911755
Alignment:
| Q |
426 |
attttatccaataaaaaagtaagtgttaaagag |
458 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
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| T |
44911723 |
attttatccaataaaaaaataagtgttaaagag |
44911755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 453
Target Start/End: Original strand, 46623089 - 46623117
Alignment:
| Q |
425 |
aattttatccaataaaaaagtaagtgtta |
453 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
46623089 |
aattttatccaataaaaaagtaagtgtta |
46623117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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