View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19686_high_6 (Length: 296)

Name: NF19686_high_6
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19686_high_6
NF19686_high_6
[»] chr4 (8 HSPs)
chr4 (105-277)||(34710393-34710565)
chr4 (25-96)||(12819358-12819429)
chr4 (22-96)||(25768607-25768681)
chr4 (43-97)||(2860299-2860353)
chr4 (24-99)||(34856808-34856883)
chr4 (67-96)||(32987552-32987581)
chr4 (27-60)||(32987575-32987608)
chr4 (40-96)||(41219947-41220003)
[»] chr3 (22 HSPs)
chr3 (97-277)||(9642342-9642520)
chr3 (109-276)||(54528128-54528295)
chr3 (16-96)||(2848494-2848574)
chr3 (13-99)||(33635793-33635879)
chr3 (13-96)||(10258314-10258397)
chr3 (156-279)||(40162761-40162883)
chr3 (100-172)||(40162900-40162970)
chr3 (40-96)||(51536374-51536430)
chr3 (50-98)||(23241317-23241365)
chr3 (25-101)||(11334772-11334847)
chr3 (40-96)||(42908682-42908738)
chr3 (24-95)||(11675549-11675620)
chr3 (41-99)||(16056799-16056857)
chr3 (42-96)||(29728805-29728859)
chr3 (24-78)||(39851417-39851471)
chr3 (49-93)||(15101427-15101471)
chr3 (40-96)||(30464497-30464553)
chr3 (24-96)||(37599186-37599258)
chr3 (40-98)||(45103345-45103403)
chr3 (22-96)||(53612618-53612692)
chr3 (27-76)||(33895716-33895765)
chr3 (49-93)||(51228770-51228814)
[»] chr7 (13 HSPs)
chr7 (16-96)||(11733479-11733559)
chr7 (13-99)||(29984156-29984242)
chr7 (13-78)||(36859048-36859113)
chr7 (13-78)||(47424638-47424703)
chr7 (40-96)||(36098824-36098880)
chr7 (37-96)||(34258499-34258558)
chr7 (13-78)||(47424371-47424436)
chr7 (56-96)||(10991935-10991975)
chr7 (40-96)||(16197972-16198028)
chr7 (47-98)||(34190956-34191007)
chr7 (27-96)||(49096489-49096557)
chr7 (24-96)||(14801282-14801354)
chr7 (24-96)||(15248274-15248346)
[»] chr6 (6 HSPs)
chr6 (13-96)||(22350471-22350554)
chr6 (24-101)||(30270271-30270348)
chr6 (24-96)||(21528099-21528171)
chr6 (13-96)||(24067318-24067392)
chr6 (47-96)||(23596686-23596735)
chr6 (48-96)||(11466191-11466239)
[»] chr5 (7 HSPs)
chr5 (13-99)||(8760205-8760291)
chr5 (40-102)||(40144657-40144719)
chr5 (24-97)||(22638777-22638850)
chr5 (24-96)||(33898152-33898224)
chr5 (44-78)||(36745546-36745580)
chr5 (39-96)||(6460565-6460622)
chr5 (40-96)||(32623011-32623067)
[»] chr2 (12 HSPs)
chr2 (16-100)||(39061157-39061241)
chr2 (20-96)||(18541485-18541561)
chr2 (19-98)||(29523120-29523199)
chr2 (13-101)||(7154346-7154434)
chr2 (13-96)||(31901780-31901863)
chr2 (24-101)||(37314222-37314299)
chr2 (24-96)||(7502156-7502228)
chr2 (40-96)||(3989750-3989806)
chr2 (40-96)||(6064831-6064887)
chr2 (39-98)||(19262284-19262343)
chr2 (24-96)||(12341167-12341239)
chr2 (63-96)||(21799961-21799994)
[»] chr1 (14 HSPs)
chr1 (13-96)||(12793578-12793661)
chr1 (20-100)||(9294528-9294599)
chr1 (44-96)||(28235715-28235767)
chr1 (24-99)||(44258515-44258590)
chr1 (24-101)||(48302482-48302560)
chr1 (40-96)||(32364975-32365031)
chr1 (24-102)||(52586081-52586159)
chr1 (36-75)||(20726840-20726879)
chr1 (19-58)||(46534540-46534579)
chr1 (36-77)||(18033527-18033568)
chr1 (24-96)||(27414334-27414405)
chr1 (40-99)||(24639599-24639658)
chr1 (24-97)||(19553322-19553395)
chr1 (32-96)||(50357903-50357967)
[»] chr8 (10 HSPs)
chr8 (28-95)||(14910905-14910972)
chr8 (16-99)||(30361261-30361339)
chr8 (24-96)||(3656555-3656627)
chr8 (40-96)||(40484689-40484745)
chr8 (25-96)||(27678559-27678630)
chr8 (24-101)||(5969291-5969368)
chr8 (13-78)||(19725846-19725911)
chr8 (43-98)||(13486453-13486508)
chr8 (24-96)||(38209712-38209784)
chr8 (39-96)||(9457400-9457457)
[»] scaffold0070 (1 HSPs)
scaffold0070 (24-96)||(13417-13489)
[»] scaffold0036 (1 HSPs)
scaffold0036 (41-99)||(52712-52770)
[»] scaffold0636 (1 HSPs)
scaffold0636 (24-99)||(2273-2343)
[»] scaffold0116 (1 HSPs)
scaffold0116 (49-99)||(8680-8730)
[»] scaffold0074 (1 HSPs)
scaffold0074 (22-96)||(54920-54994)
[»] scaffold0045 (1 HSPs)
scaffold0045 (32-96)||(28589-28653)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 34710393 - 34710565
Alignment:
Q  105 tgttctatttttatttatgttatattactgtaatttgaccattagttatttatgaaattcagacttttattatttatattgtactgctcattttgtgaac 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  34710393 tgttctatttttatttatgttatattgctgtaatttgaccattagttatttatgaaattcatacttttattatttatattgtagtgctcattttgtgaac 34710492  T
Q  205 acctttaatctttaagattttgaacattattctattattagaaaatatatttcagctaaatagacccgtgcgg 277  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||    
T  34710493 acctttgatctttaagattttgaacattattctattattagaagatatatttcagctaaacagactcgtgcgg 34710565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 12819429 - 12819358
Alignment:
Q  25 gaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||| || |||||||||||||||||||||||||||||| | ||| |||||||||  ||| |||||||||    
T  12819429 gaaccggctaaccctccggttcacggtcggaccggttcgactggccgatccggtccgagttttaaaactatg 12819358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 25768607 - 25768681
Alignment:
Q  22 accgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||| | |||||| |||||||||||| ||| |||| |||||||||||| ||  ||||||||||||||||||    
T  25768607 accgaaccagataccccaccggttcacggttggatcggtccgaccgaccggttcgagccggttttcaaaactatg 25768681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 2860299 - 2860353
Alignment:
Q  43 gttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatga 97  Q
    ||||||||||||||||||||||||| |||||||| ||||  ||| ||||||||||    
T  2860299 gttcacggtcggaccggttcgaccggccggtccgatccgagttttaaaactatga 2860353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 34856808 - 34856883
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    ||||||||  ||||| |||||||| |||| || |||||| |||| ||||||||  |||||||| ||||||||||||    
T  34856808 cgaaccggacaccccaccggttcatggtccgatcggttcaaccggccggtccgagccggttttaaaaactatgatt 34856883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 32987581 - 32987552
Alignment:
Q  67 gaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||||||||||||||||||    
T  32987581 gaccggtccggtccggttttcaaaactatg 32987552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 32987608 - 32987575
Alignment:
Q  27 accggttacccctccggttcacggtcggaccggt 60  Q
    ||||||||||| ||||||||||||||||||||||    
T  32987608 accggttacccttccggttcacggtcggaccggt 32987575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 41220003 - 41219947
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||| |||||||| |||| ||| |||||||||  ||| |||||||||    
T  41220003 ccggttcacggtcgaaccggttcaaccggccgatccggtccgagttttaaaactatg 41219947  T

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Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 9642342 - 9642520
Alignment:
Q  97 atttttgttgttctatttttatttatgttatattactgtaatttgaccattagttatttatgaaattcagacttttattatttatattgtactgctcatt 196  Q
    ||||||| |||||||||||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9642342 atttttgctgttctatttttatttatgttatattgctgtaat--gacctttagttatttatgaaattcagacttttattatttatattgtagtgctcatt 9642439  T
Q  197 ttgtgaacacctttaatctttaagattttgaacattattctattattagaaaatatatttcagctaaatagacccgtgcgg 277  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  9642440 ttgtgaacacctttgatctttaagattttgaacattattctattattagaagatatatttaagctaaacagacccgtgcgg 9642520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 109 - 276
Target Start/End: Original strand, 54528128 - 54528295
Alignment:
Q  109 ctatttttatttatgttatattactgtaatttgaccattagttatttatgaaattcagacttttattatttatattgtactgctcattttgtgaacacct 208  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  54528128 ctatttttatttatgttatattgctgtaatttgaccattagttatttatgaaattcagatttttattatttatattgtagtgctcattttgtaaacacct 54528227  T
Q  209 ttaatctttaagattttgaacattattctattattagaaaatatatttcagctaaatagacccgtgcg 276  Q
    || ||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||    
T  54528228 ttgatcttcaagattttgaacattattctattattagaagatatatttcagctaagcagatccgtgcg 54528295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 2848574 - 2848494
Alignment:
Q  16 atgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  2848574 atgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 2848494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 33635793 - 33635879
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  33635793 aatatgtcaaccgaaccggttacccctccgattcacggtcggaccggttcgaccggccgatccggtccggttttcaaaactatgatt 33635879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 10258397 - 10258314
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||| ||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||    
T  10258397 aatatgtcaaccgaaccggttacccctccggttcacggtccgactggttcgatcggccggtccggtccggttttcaaaactatg 10258314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 279
Target Start/End: Complemental strand, 40162883 - 40162761
Alignment:
Q  156 atgaaattcagacttttattatttatattgtactgctcattttgtgaacacctttaatctttaagattttgaacattattctattattagaaaatatatt 255  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||| ||| |||||||| ||||  || |||||| ||||||| ||| |||| ||    
T  40162883 atgaaattcagacttttattatt-atgttgtagtgctcattttgtgaacacatttgatctttaaaatttgaaatattattttattatttgaagatatgtt 40162785  T
Q  256 tcagctaaatagacccgtgcggtg 279  Q
    | ||||||| ||||  ||||||||    
T  40162784 taagctaaacagacatgtgcggtg 40162761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 40162970 - 40162900
Alignment:
Q  100 tttgttgttctatttttatttatgttatattactgtaatttgaccattagttatttatgaaattcagactttt 172  Q
    ||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  40162970 tttgttgttctatttttatttatcttatattgct-taatt-gaccattagttatttatgaaattcagactttt 40162900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 51536430 - 51536374
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  51536430 ccggttcacggtcggaccggttcgaccggccggtccgatccggtttttaaaactatg 51536374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 23241365 - 23241317
Alignment:
Q  50 gtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgat 98  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  23241365 gtcggaccggttcaaccggccggtccggtccggttttcaaaactatgat 23241317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 11334847 - 11334772
Alignment:
Q  25 gaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatttt 101  Q
    |||||||| ||||| | ||||||| ||||||||||||  || | |||||||||||||||||||||||||||| ||||    
T  11334847 gaaccggtcaccccactggttcacagtcggaccggtta-actggccggtccggtccggttttcaaaactatggtttt 11334772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 42908682 - 42908738
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||||| ||||||||  | |||||| |||||||||    
T  42908682 ccggttcacggtcggaccggttcgaccggccggtccgagctggtttttaaaactatg 42908738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 11675620 - 11675549
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactat 95  Q
    ||||||||| ||||| |||||||  |||||||||| ||| ||||  |||||||||||| |||||||||||||    
T  11675620 cgaaccggtcaccccaccggttcctggtcggaccgattcaaccggtcggtccggtccgattttcaaaactat 11675549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 16056857 - 16056799
Alignment:
Q  41 cggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||| |||||||||||||||||||  ||||||||  |||||||| ||||||||||||    
T  16056857 cggttcccggtcggaccggttcgaccagccggtccgagccggtttttaaaactatgatt 16056799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 29728805 - 29728859
Alignment:
Q  42 ggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||| ||||||||  || ||||| |||||||||    
T  29728805 ggttcacggtcggaccggttcgaccggccggtccgagccagtttttaaaactatg 29728859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 39851417 - 39851471
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggt 78  Q
    ||||||||| ||| | ||||||||||||||||||||||| |||| ||||||||||    
T  39851417 cgaaccggtcacctcaccggttcacggtcggaccggttcaaccggccggtccggt 39851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 15101427 - 15101471
Alignment:
Q  49 ggtcggaccggttcgaccgaccggtccggtccggttttcaaaact 93  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||    
T  15101427 ggtcggaccggttcgaccggccggtccgagccggttttcaaaact 15101471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 30464553 - 30464497
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||  |||||||||||||| |||| ||||||||||| | ||||||||||||||    
T  30464553 ccggttcctggtcggaccggttcaaccggccggtccggtctgattttcaaaactatg 30464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 37599258 - 37599186
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||| | ||||| |||||||  |||||||||||||| |||| |||||||  |||| ||||||||||||||    
T  37599258 cgaaccgatcaccccaccggttcctggtcggaccggttcaaccggccggtccaatccgattttcaaaactatg 37599186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 45103403 - 45103345
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgat 98  Q
    |||||||||||||| |||||||||| || |||||||||||||  ||| |||| ||||||    
T  45103403 ccggttcacggtcgaaccggttcgatcggccggtccggtccgagttttaaaattatgat 45103345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 53612618 - 53612692
Alignment:
Q  22 accgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||| | |||| |||||| | ||| |||||||||||||| ||| |||||||||  ||| |||||||||    
T  53612618 accgaaccggtcatcccttcggttcgcagtccgaccggttcgaccggccgatccggtccgaattttaaaactatg 53612692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 33895765 - 33895716
Alignment:
Q  27 accggttacccctccggttcacggtcggaccggttcgaccgaccggtccg 76  Q
    |||||||||| | |||||| |||||||||||| |||||||||||| ||||    
T  33895765 accggttacctcaccggtttacggtcggaccgattcgaccgaccgatccg 33895716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 51228814 - 51228770
Alignment:
Q  49 ggtcggaccggttcgaccgaccggtccggtccggttttcaaaact 93  Q
    |||||||||||||  |||| |||||||||||||| ||||||||||    
T  51228814 ggtcggaccggttgaaccggccggtccggtccgggtttcaaaact 51228770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 11733559 - 11733479
Alignment:
Q  16 atgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11733559 atgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 11733479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 29984156 - 29984242
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  29984156 aatatgtcaaccgaaccggttacccctccggttcacggtcggaccgattcaaccggccggtccggtccggttttcaaaactatgatt 29984242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 36859048 - 36859113
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggt 78  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36859048 aatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccggtccggt 36859113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 47424638 - 47424703
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggt 78  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  47424638 aatatgtcaaccgaaccggttacccctccgattcatggtcggaccggttcgaccggccggtccggt 47424703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 36098880 - 36098824
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  36098880 ccggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 36098824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 34258558 - 34258499
Alignment:
Q  37 cctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  34258558 cctccagttcacggtcggaccggttcgaccgaccggtccgatccgggtttcaaaactatg 34258499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 47424371 - 47424436
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggt 78  Q
    |||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  47424371 aatatgtcaaccgaaccggttacctctccgattcatggtcggaccggttcgaccggccggtccggt 47424436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 10991975 - 10991935
Alignment:
Q  56 ccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  10991975 ccggttcgaccgaccggtccggtccgggtttcaaaactatg 10991935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 16198028 - 16197972
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||||||||| | |||| ||||||| |||||| |||||||||||||    
T  16198028 ccggttcacggtcggaccggtccaaccggccggtccagtccgggtttcaaaactatg 16197972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 34191007 - 34190956
Alignment:
Q  47 acggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgat 98  Q
    ||||||||| ||||||||||| ||||||||||| |||||| |||||||||||    
T  34191007 acggtcggatcggttcgaccggccggtccggtctggtttttaaaactatgat 34190956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 49096489 - 49096557
Alignment:
Q  27 accggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||| ||||||||||||| |||||| | | |||| |||||| ||||| |||||||||||||||    
T  49096489 accggttacccttccggttcacggttggaccgatccaaccggccggtctggtcc-gttttcaaaactatg 49096557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 14801354 - 14801282
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||| ||||| |||| ||  ||||| |||||||| |||| ||| ||||||||| ||||||||||||||    
T  14801354 cgaaccggtcaccccaccggatcctggtcgaaccggttcaaccggccgatccggtccgattttcaaaactatg 14801282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 15248346 - 15248274
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||| ||||| |||| ||  ||||| |||||||| |||| ||| ||||||||| ||||||||||||||    
T  15248346 cgaaccggtcaccccaccggatcctggtcgaaccggttcaaccggccgatccggtccgattttcaaaactatg 15248274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 22350554 - 22350471
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22350554 aatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccggtccggtccggttttcaaaactatg 22350471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 30270271 - 30270348
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatttt 101  Q
    |||||||||||||||  ||||||  |||||||||||||| | || ||| ||||||| |||||||||||||||||||||    
T  30270271 cgaaccggttaccccatcggttcctggtcggaccggttcaatcggccgatccggtctggttttcaaaactatgatttt 30270348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 21528171 - 21528099
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||  |||||||  |||||||||||||  |||| |||||||||||||| |||||||||||||    
T  21528171 cgaaccggttaccctaccggttcctggtcggaccggttgaaccggccggtccggtccgggtttcaaaactatg 21528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 24067392 - 24067318
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||| ||||||||||||||||||||||||||||         ||||||||||| ||||||||||||| ||||||||||||||    
T  24067392 aatatgtcaaccgaaccggttacccctccggttca---------cggttcgaccggccggtccggtccgattttcaaaactatg 24067318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 23596686 - 23596735
Alignment:
Q  47 acggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  23596686 acggtcggaccggttcgaccgtccggtccggtctggttttaaaaactatg 23596735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 11466191 - 11466239
Alignment:
Q  48 cggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||    
T  11466191 cggttggaccggttcaaccggccggtccggtccggttttcaaaactatg 11466239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 8760291 - 8760205
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  8760291 aatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccgatccggtccggttttcaaaactatgatt 8760205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 40144657 - 40144719
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgattttt 102  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  40144657 ccggttcacggtcggaccggttcaaccgaccggtccggcccggttttcaaaactatgcttttt 40144719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 22638777 - 22638850
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatga 97  Q
    ||||||| | ||||| |||||||  |||||||||||||| |||| |||||||| |||| |||||||||||||||    
T  22638777 cgaaccgatcaccccaccggttcctggtcggaccggttcaaccggccggtccgatccgattttcaaaactatga 22638850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 33898224 - 33898152
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||  |||||  ||||||  |||||||||||| | |||| ||||| ||||||||||||||||||||||    
T  33898224 cgaaccggccaccccatcggttccaggtcggaccggtccaaccggccggttcggtccggttttcaaaactatg 33898152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 36745580 - 36745546
Alignment:
Q  44 ttcacggtcggaccggttcgaccgaccggtccggt 78  Q
    |||||||||||||||||||||||| ||||||||||    
T  36745580 ttcacggtcggaccggttcgaccggccggtccggt 36745546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 6460565 - 6460622
Alignment:
Q  39 tccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||| ||||||| |||||||||| ||||||| || ||  |||||||||||||    
T  6460565 tccggttcacagtcggactggttcgaccggccggtcctgttcgtgtttcaaaactatg 6460622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 32623067 - 32623011
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||  ||||||||||||||||||| |||||||| ||||  ||| |||||||||    
T  32623067 ccggttcctggtcggaccggttcgaccggccggtccgatccgagttttaaaactatg 32623011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 39061241 - 39061157
Alignment:
Q  16 atgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  39061241 atgccaaccgaaccggttacccctccggttcacggtcggaccagttcgaccggccggtccagtccggttttcaaaactatgattt 39061157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 18541485 - 18541561
Alignment:
Q  20 caaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  18541485 caaccgaaccggttacccctccggttcacggtcggactggttcgaccggccggtccggtccggttttcaaaactatg 18541561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 29523199 - 29523120
Alignment:
Q  19 ccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgat 98  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  29523199 ccaaccgaaccggttacccatccggttcacggtcggaccggttcgaccagccggtccggtccggttttcaaaactatgat 29523120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 7154346 - 7154434
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatttt 101  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||| ||||    
T  7154346 aatatgtcaaccgaaccggttacccctccggttcacggtcggaccggttcgaccggccgatctagtccggttttcaaaactatgctttt 7154434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 31901780 - 31901863
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  31901780 aatatgtcaaccgaaccgattatccctccggttcacggtcggaccggtccgaccggccgatccggtccggttttcaaaactatg 31901863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 37314299 - 37314222
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatttt 101  Q
    ||||||||| ||||| |||||||  |||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  37314299 cgaaccggtcaccccaccggttcctggtcggaccggttcaaccggccggtccggtccggttttcaaaactatgctttt 37314222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 7502156 - 7502228
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||  |||||||  |||||||||||||  |||| |||||||||||||| |||||||||||||    
T  7502156 cgaaccggttaccctaccggttcctggtcggaccggttgaaccggccggtccggtccgggtttcaaaactatg 7502228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 3989750 - 3989806
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||| ||||| ||||||| |||||| |||||||||||||||||| |||||||||    
T  3989750 ccggttcccggtctgaccggtccgaccggccggtccggtccggtttttaaaactatg 3989806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 6064887 - 6064831
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||| |||||||||||||||||||||||| ||||  |||||||| |||||||||    
T  6064887 ccggttcccggtcggaccggttcgaccgaccgttccgagccggtttttaaaactatg 6064831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 19262343 - 19262284
Alignment:
Q  39 tccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgat 98  Q
    |||||||| ||| |||||||| ||||||| ||||||||||||| |||| |||||||||||    
T  19262343 tccggttcccgggcggaccggctcgaccggccggtccggtccgatttttaaaactatgat 19262284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 12341167 - 12341239
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||| ||||||| ||| |||||||||  ||||||||||||| ||||||||  |||| ||| |||||||||    
T  12341167 cgaaccgcttaccccaccgcttcacggtccaaccggttcgaccggccggtccgagccgggttttaaaactatg 12341239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 21799994 - 21799961
Alignment:
Q  63 gaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||| |||||||||    
T  21799994 gaccgaccggtccggtccggtttttaaaactatg 21799961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 12793578 - 12793661
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12793578 aatatgtcaaccgaaccagttacccctccagttcacggtcggaccggttcgactgaccggtccggtccggttttcaaaactatg 12793661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 9294528 - 9294599
Alignment:
Q  20 caaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgattt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  9294528 caaccgaaccgattacccctccggttcacggtcggaccgg---------ccggtccggtccggttttcaaaactatgattt 9294599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 28235715 - 28235767
Alignment:
Q  44 ttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  28235715 ttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 28235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 44258515 - 44258590
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    ||||||||| ||||| |||||||  |||||||||||||| ||||  |||||||||||| |||||||||||||||||    
T  44258515 cgaaccggtcaccccaccggttcctggtcggaccggttcaaccggacggtccggtccgattttcaaaactatgatt 44258590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 48302560 - 48302482
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcga-ccgaccggtccggtccggttttcaaaactatgatttt 101  Q
    ||||||||| ||| | || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  48302560 cgaaccggtcaccacgccagttcacggtcggaccggttcaaaccgtccggtccggtccggttttcaaaactatgctttt 48302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 32364975 - 32365031
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||| |||||||||    
T  32364975 ccggttcacggtcggaccggttcgaccggccggtccgagccggtttttaaaactatg 32365031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 52586081 - 52586159
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgattttt 102  Q
    ||||||| |||||||||||||||  ||||  ||||||||||||| ||||||||   ||||||| |||||||||||||||    
T  52586081 cgaaccgcttacccctccggttcttggtccaaccggttcgaccggccggtccgagtcggtttttaaaactatgattttt 52586159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 20726840 - 20726879
Alignment:
Q  36 ccctccggttcacggtcggaccggttcgaccgaccggtcc 75  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  20726840 ccctccggttcacggtcggaccggttcgaccggccggtcc 20726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 46534579 - 46534540
Alignment:
Q  19 ccaaccgaaccggttacccctccggttcacggtcggaccg 58  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  46534579 ccaaccgaaccggttacctctccggttcacggtcggaccg 46534540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 18033527 - 18033568
Alignment:
Q  36 ccctccggttcacggtcggaccggttcgaccgaccggtccgg 77  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  18033527 ccctccgattcacggtcggaccggttcgaccggccggtccgg 18033568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 27414405 - 27414334
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||  ||||| |||||||| |||||||||||||| |||| ||||| || || ||||||||||||||||    
T  27414405 cgaaccggccaccccaccggttca-ggtcggaccggttcaaccggccggttcgatctggttttcaaaactatg 27414334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 24639599 - 24639658
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||||  ||| ||||||||||||||| ||||||||  |||||||| ||||||||||||    
T  24639599 ccggttccaggttggaccggttcgaccggccggtccgagccggtttttaaaactatgatt 24639658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 19553395 - 19553322
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatga 97  Q
    ||||||| |||||||||| ||||  ||||  ||||||||||||| ||||||||  || ||||| ||||||||||    
T  19553395 cgaaccgcttacccctccagttcttggtccaaccggttcgaccggccggtccgaaccagtttttaaaactatga 19553322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 50357967 - 50357903
Alignment:
Q  32 ttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||||||||| |||||  |||| |||||||| ||||||||  |||||||| |||| ||||    
T  50357967 ttacccctccggttctcggtccaaccgattcgaccggccggtccgagccggtttttaaaagtatg 50357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 14910905 - 14910972
Alignment:
Q  28 ccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactat 95  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  14910905 ccggttacctctccggttcacggtcggaccggttcgaccggccggtccgatccggttttcaaaactat 14910972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 30361261 - 30361339
Alignment:
Q  16 atgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||     ||| ||||||||||||||||||||||    
T  30361261 atgccaaccgaaccggttactcctccgattcacggtcggaccggttcgaccga-----ccgatccggttttcaaaactatgatt 30361339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 3656555 - 3656627
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||| | ||| ||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||    
T  3656555 cgaaccggtcatcccaccggttcacggtcggaccggttcaaccggccggtccggtccagttttcaaaactatg 3656627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 40484745 - 40484689
Alignment:
Q  40 ccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  40484745 ccggttcacggtcggaccggttcgaccggccggtccggtccggtttttaaaactatg 40484689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 27678630 - 27678559
Alignment:
Q  25 gaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||| ||||| |||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  27678630 gaaccggtcaccccaccggttcctggtcggaccggttcaaccggccggtccggtccggttttcaaaactatg 27678559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 5969368 - 5969291
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatttt 101  Q
    ||||||||| |||||  ||||||  ||||||||| |||| |||| ||||||||||||||||||||| |||||||||||    
T  5969368 cgaaccggtcaccccatcggttcctggtcggaccagttcaaccggccggtccggtccggttttcaatactatgatttt 5969291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 19725911 - 19725846
Alignment:
Q  13 aatatgccaaccgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggt 78  Q
    |||||| | ||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  19725911 aatatgtctaccgaactggttacccatccgattcacggtcagaccggttcgaccgaccggtccggt 19725846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 13486508 - 13486453
Alignment:
Q  43 gttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgat 98  Q
    ||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  13486508 gttcatggtcggaccggttcaaccggccggtccggtccgcttttcaaaactatgat 13486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 38209784 - 38209712
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||| |||||||||||||||  ||||  ||||||||||||| ||||||||  |||||||| |||||||||    
T  38209784 cgaaccgcttacccctccggttcttggtccaaccggttcgaccggccggtccgagccggtttttaaaactatg 38209712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 9457400 - 9457457
Alignment:
Q  39 tccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||| ||| |||||||||||||||| |||||||| |||| |||| |||||||||    
T  9457400 tccggttcccgggcggaccggttcgaccgcccggtccgatccgatttttaaaactatg 9457457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 13417 - 13489
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    ||||||||| ||||| ||| |||  |||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  13417 cgaaccggtcaccccaccgcttcctggtcggaccggttcaaccggccggttcggtccggttttcaaaactatg 13489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 52712 - 52770
Alignment:
Q  41 cggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||||||||||||||||||| ||||  ||||||| ||||||||| ||||||||||||    
T  52712 cggttcacggtcggaccggttcaaccggtcggtccgatccggtttttaaaactatgatt 52770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 2273 - 2343
Alignment:
Q  24 cgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    |||||||||||||| |||| |||||||||||||||||    || ||||| || ||| |||||||||||||||||||    
T  2273 cgaaccggttacccttccgtttcacggtcggaccggt----ccaaccgg-cctgtctggttttcaaaactatgatt 2343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 8680 - 8730
Alignment:
Q  49 ggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatgatt 99  Q
    ||||||| ||||||||||| ||||||||  |||||||| ||||||||||||    
T  8680 ggtcggatcggttcgaccggccggtccgagccggttttgaaaactatgatt 8730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 54994 - 54920
Alignment:
Q  22 accgaaccggttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||| ||||| || || ||||||||||||||||||| ||||||||| ||||||| || ||  ||| |||||||||    
T  54994 accggaccggctaaccatccggttcacggtcggaccagttcgaccggccggtccagttcgagttttaaaactatg 54920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 28653 - 28589
Alignment:
Q  32 ttacccctccggttcacggtcggaccggttcgaccgaccggtccggtccggttttcaaaactatg 96  Q
    |||||||||||||||  ||||  ||||||||||||| ||||||||  || ||||| |||||||||    
T  28653 ttacccctccggttcttggtccaaccggttcgaccggccggtccgagccagtttttaaaactatg 28589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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