View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19686_low_12 (Length: 227)
Name: NF19686_low_12
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19686_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 46736670 - 46736481
Alignment:
| Q |
21 |
ccacgagcaggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacat |
120 |
Q |
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| T |
46736670 |
ccacgagcaggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaattttttccaacattgtcaccacat |
46736571 |
T |
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| Q |
121 |
ctttcatttccggacgcttttctggattcttgtcccagcatcttttcattatacctgctaatgcacttggacagcatctaggaatctctg |
210 |
Q |
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| T |
46736570 |
ctttcatttccggacgcttttctggattcttgtcccagcatcttttcattatatctgctaatgcacttggacagcatctaggaatctctg |
46736481 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 986262 - 986195
Alignment:
| Q |
69 |
atcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcatttccggacg |
136 |
Q |
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| T |
986262 |
atcattccaccacctttgcttgtatccagtgcttctagcattatcaccacatccttcatttccggacg |
986195 |
T |
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