View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19686_low_13 (Length: 225)
Name: NF19686_low_13
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19686_low_13 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4341 - 4547
Alignment:
| Q |
1 |
tcggatgtcgaagaatatgaagacaaaaactgcaattaagtatatacttttttatcccgtggttggtccaatccatcaatatcaaggacaggttagatta |
100 |
Q |
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|||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4341 |
tcggatttagaaaaataagaagacaaaaactgcaattaagtatatacttttttatcccgtggttggtccaatccatcaatatcaaggacaggttagatta |
4440 |
T |
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| Q |
101 |
aaattattaaaagcaaattttttgtttagccaacccacaatttagttcggactaggctcatttaacccttctagatctattaacaaaattttatggaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4441 |
aaattattaaaagcaaattttttgtttagccaacccacaatttagttcggactaggctcatttaacacttctagatctattaacaaaattttatggaagc |
4540 |
T |
|
| Q |
201 |
atcacat |
207 |
Q |
| |
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||||||| |
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| T |
4541 |
atcacat |
4547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4341 - 4547
Alignment:
| Q |
1 |
tcggatgtcgaagaatatgaagacaaaaactgcaattaagtatatacttttttatcccgtggttggtccaatccatcaatatcaaggacaggttagatta |
100 |
Q |
| |
|
|||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4341 |
tcggatttagaaaaataagaagacaaaaactgcaattaagtatatacttttttatcccgtggttggtncaatccatcaatatcaaggacaggttagatta |
4440 |
T |
|
| Q |
101 |
aaattattaaaagcaaattttttgtttagccaacccacaatttagttcggactaggctcatttaacccttctagatctattaacaaaattttatggaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4441 |
aaattattaaaagcaaattttttgtttagccaacccacaatttagttcggactaggctcatttaacacttctagatctattaacaaaattttatggaagc |
4540 |
T |
|
| Q |
201 |
atcacat |
207 |
Q |
| |
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||||||| |
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|
| T |
4541 |
atcacat |
4547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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