View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19686_low_2 (Length: 604)
Name: NF19686_low_2
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19686_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 44840542 - 44839978
Alignment:
| Q |
18 |
ttaatgattgactgacaaaagtaatgatcctgaacagggcacacaaaaatgagttacagaagaagtgggaggccctt-actgtggtccacaataatgatt |
116 |
Q |
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| T |
44840542 |
ttaatgattgactgacaaaagtaatgatcctgaacagggcacacaaaaatgagttacagaagaagtgggaggccctttactgtggtccacaataatgatt |
44840443 |
T |
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| Q |
117 |
ttcggggaaaatgtgtatctcaattttaccccaataatgagcagctgattcaaggtattgctgatgttaacctaggctcaggacaggatgatggcctatg |
216 |
Q |
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| T |
44840442 |
ttcggggaaaatgtgtatctcaattttaccccaataatgagcagctgattcaaggtattgctgatgttaacctaggctcaggacaggatgatggcctatg |
44840343 |
T |
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| Q |
217 |
ggtgacttattcaaagaaatcgaagaatcgaggtggaagcattgctgccaaacagttgggttgttcagcccgaagttctaatcctagagcatgtnnnnnn |
316 |
Q |
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| T |
44840342 |
ggagacttattcaaagaaatcgaagaatcgaggtggaagcattgctgccaaacagttgggttgttcagcccgaagttctaatcctagagcatgtgggggg |
44840243 |
T |
|
| Q |
317 |
natacagatatggctccaatgccaggcatgcgcgattacagtggagctggaagagctgctggaaaccttcgacggacaccaaatactggttatatgagac |
416 |
Q |
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| T |
44840242 |
gatacagatatggctccaatgccaggcatgcgcgattacagtggagctggaagagctgctggaaaccttcgacggacaccaaatactggttatatgagac |
44840143 |
T |
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| Q |
417 |
ctgctggtagaggctatggaaggccccatccaggtacaggtggatatggatacaatgggacttctaatcctatcattcgtcctcctccggagggtgtctg |
516 |
Q |
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| T |
44840142 |
ctgctggtagaggctatggaaggccccatccaggtacaggtggatatggatacaatgggacttctaatcctatcattcgtcctcctccggagggtgtctg |
44840043 |
T |
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| Q |
517 |
caaccggaaatcaatgcatgtaagggatgaaattgtaccagaggagtttgaatttgaacagaaga |
581 |
Q |
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| T |
44840042 |
caaccggaaatcaatgcatgtaagggatgaaattgtaccagaggagtttgaatttgaacagaaga |
44839978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 17 - 568
Target Start/End: Complemental strand, 44852309 - 44851751
Alignment:
| Q |
17 |
attaatgattgactgacaaaagtaatgatcctgaacagggcacacaaaaatgagttacagaagaagtgggaggccctt-actgtggtccacaataatgat |
115 |
Q |
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|||||||||||||||| |||||||| |||||||||||||| |||| |||||||| ||||||| |||| |||||||| |||| || |||| ||||| |
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| T |
44852309 |
attaatgattgactgataaaagtaacgatcctgaacagggtgtacaagaatgagttccagaagaggtggtaggccctttactgcggctggcaatgatgat |
44852210 |
T |
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| Q |
116 |
tttcgg------ggaaaatgtgtatctcaattttaccccaataatgagcagctgattcaaggtattgctgatgttaacctaggctcaggacaggatgatg |
209 |
Q |
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| T |
44852209 |
tttcagtccaagggaaaaggtgtatctcaatttgatcccaaaactgagcagctggctcaaggtattgctgatgttaacttaggctctggacaggatgatg |
44852110 |
T |
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| Q |
210 |
gcctatgggtgacttattcaaagaaatcgaagaatcgaggtgg---aagcattgctgccaaacagttgggttgttcagcccgaagttctaatcctagagc |
306 |
Q |
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| | ||||| ||||||||||||||||||||| || ||||||| |||| ||||||||||||| |||| | |||| | |||||||||||||||| |
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| T |
44852109 |
ggccatgggagacttattcaaagaaatcgaaaaacagaggtggtggaagcggtgctgccaaacagcggggtcctccagctcatggttctaatcctagagc |
44852010 |
T |
|
| Q |
307 |
atgtnnnnnnnatacagatatggctccaatgccaggcatgcgcgattacagtggagctggaagagctgctggaaaccttcgacggacaccaaatactggt |
406 |
Q |
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|| || ||||| |||||| || || ||| || | || |||||||||||||||||||||||||||||| | | |||||||||| ||||| |
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| T |
44852009 |
gtg---ggggaatgcagatgtggctcaaaagcagggcgtgtggaataacagtggagctggaagagctgctggaaacccctggcagacaccaaatgctggt |
44851913 |
T |
|
| Q |
407 |
tatatgagacctgctggtagaggctatggaaggccccatccaggtacaggtggatatggatacaatgggacttctaatcctatcattcgtcctcctccgg |
506 |
Q |
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||||||||||| |||||||||||| ||||||||||||| |||| || ||||||||||||||||||| |||||||||||| ||||||| |||||||| |
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| T |
44851912 |
tatatgagacccgctggtagaggcaatggaaggccccagccagccactggtggatatggatacaatgtgacttctaatcccatcattcctcctcctctac |
44851813 |
T |
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| Q |
507 |
agggtgtctgcaaccggaaatcaatgcatgtaagggatgaaattgtaccagaggagtttgaa |
568 |
Q |
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|||||| ||| ||| ||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
44851812 |
agggtggctggaactggaaatcaactcatgcaaggaatgaaattgtaccagaggagtttgaa |
44851751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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