View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19686_low_4 (Length: 537)

Name: NF19686_low_4
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19686_low_4
NF19686_low_4
[»] chr2 (15 HSPs)
chr2 (19-524)||(37561670-37562167)
chr2 (37-116)||(29823490-29823569)
chr2 (40-91)||(43073960-43074011)
chr2 (37-131)||(44439232-44439329)
chr2 (53-110)||(28028839-28028896)
chr2 (53-118)||(37402256-37402321)
chr2 (76-132)||(13246759-13246815)
chr2 (179-231)||(28028958-28029010)
chr2 (159-199)||(29968937-29968977)
chr2 (38-129)||(29823620-29823711)
chr2 (37-131)||(32827494-32827589)
chr2 (55-118)||(44810374-44810437)
chr2 (38-131)||(33502858-33502951)
chr2 (46-131)||(42740968-42741052)
chr2 (41-89)||(5977166-5977214)
[»] chr7 (4 HSPs)
chr7 (39-131)||(18349758-18349850)
chr7 (26-91)||(40422763-40422828)
chr7 (53-98)||(36271330-36271375)
chr7 (37-117)||(17908165-17908244)
[»] chr8 (7 HSPs)
chr8 (38-129)||(1836224-1836315)
chr8 (40-131)||(2924761-2924852)
chr8 (37-113)||(7437647-7437723)
chr8 (30-91)||(32927867-32927927)
chr8 (37-128)||(11791746-11791837)
chr8 (37-98)||(39648382-39648443)
chr8 (53-129)||(11521189-11521264)
[»] chr6 (8 HSPs)
chr6 (55-150)||(25195580-25195677)
chr6 (37-93)||(10874328-10874384)
chr6 (40-131)||(10564934-10565025)
chr6 (54-126)||(13687590-13687662)
chr6 (159-200)||(2234146-2234187)
chr6 (27-91)||(4910880-4910943)
chr6 (27-63)||(6653781-6653817)
chr6 (189-225)||(10564812-10564848)
[»] chr4 (19 HSPs)
chr4 (37-117)||(29903995-29904075)
chr4 (35-91)||(11271587-11271643)
chr4 (42-129)||(35728931-35729018)
chr4 (37-131)||(22683845-22683939)
chr4 (53-131)||(24921456-24921533)
chr4 (30-131)||(33560580-33560681)
chr4 (38-131)||(43628100-43628193)
chr4 (28-91)||(54705440-54705503)
chr4 (49-131)||(4014161-4014243)
chr4 (30-131)||(25319022-25319123)
chr4 (159-223)||(27045573-27045636)
chr4 (178-229)||(17897795-17897845)
chr4 (53-131)||(53782598-53782676)
chr4 (191-232)||(3652752-3652792)
chr4 (53-131)||(26641625-26641705)
chr4 (85-126)||(28904434-28904475)
chr4 (159-200)||(37500207-37500248)
chr4 (159-199)||(2206263-2206303)
chr4 (40-80)||(26617193-26617233)
[»] chr5 (12 HSPs)
chr5 (41-131)||(12432963-12433053)
chr5 (32-131)||(42439627-42439726)
chr5 (37-111)||(3970430-3970504)
chr5 (53-131)||(29923239-29923317)
chr5 (55-129)||(42194543-42194617)
chr5 (38-91)||(9818717-9818769)
chr5 (53-118)||(17862503-17862568)
chr5 (53-95)||(1102131-1102173)
chr5 (160-206)||(2937858-2937904)
chr5 (32-90)||(38845761-38845819)
chr5 (26-95)||(1105410-1105479)
chr5 (37-70)||(10898704-10898737)
[»] chr3 (8 HSPs)
chr3 (53-131)||(49634049-49634127)
chr3 (53-123)||(21513364-21513434)
chr3 (32-90)||(23290269-23290327)
chr3 (30-91)||(1441431-1441491)
chr3 (30-70)||(48411025-48411065)
chr3 (76-132)||(49891290-49891346)
chr3 (40-131)||(43965618-43965709)
chr3 (53-109)||(29064050-29064106)
[»] chr1 (12 HSPs)
chr1 (76-123)||(48832910-48832957)
chr1 (26-131)||(32088585-32088687)
chr1 (37-131)||(35592478-35592571)
chr1 (30-131)||(12655219-12655320)
chr1 (27-91)||(6021776-6021839)
chr1 (180-230)||(5167381-5167430)
chr1 (30-128)||(18325402-18325500)
chr1 (37-115)||(28024698-28024776)
chr1 (57-127)||(31785067-31785137)
chr1 (77-159)||(6568602-6568686)
chr1 (26-70)||(21636616-21636660)
chr1 (171-223)||(39289188-39289239)
[»] scaffold0393 (1 HSPs)
scaffold0393 (26-81)||(12366-12421)


Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Original strand, 37561670 - 37562167
Alignment:
Q  19 tgaattcctcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37561670 tgaattcctcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgatttttacactcaaat 37561769  T
Q  119 ctattgttcaacttttgttatgtgaatgtatccaatcataattcaactcacatttaactaaaatcaatacattcaaaatcaagtttttatcaccgcagaa 218  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561770 ctattgttcaacttttgttatgtgaatgtatccaa--------caactcacatttaactaaaatcaatacattcaaaatcaagtttttatcaccgcagaa 37561861  T
Q  219 ccaaacaaacactttgtaacttctacaaatcacaacaccatcgtgattttgtcaaactcggcatgatttcaaacatgcacttagttaaagaacaagttga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561862 ccaaacaaacactttgtaacttctacaaatcacaacaccatcgtgattttgtcaaactcggcatgatttcaaacatgcacttagttaaagaacaagttga 37561961  T
Q  319 actagtccaatgatatcagttttgtagttatttggttgtatgattaaattcatccattcaaacggttgatacaggcagagcaggtatggaaacattgtag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37561962 actagtccaatgatatcagttttgtagttatttggttgtatgattaaattcatccattcaaaccgttgatacaggcagagcaggtatggaaacattgtag 37562061  T
Q  419 gaaagaaatgataaagaggaataatgatatcaatgaatttgatttgcatctattggatgagacgagcaaaaagagatttaaatttctatctccccgtatg 518  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37562062 gaaagaaatgataaagaggaatcatgatatcaatgaatttgatttgcatctattggatgagacgagcgaaaagagatttaaatttctatctccccgtatg 37562161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 29823490 - 29823569
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaa 116  Q
    ||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||  |||||||||||| |||||||||    
T  29823490 ttgattttgcctctaaaattgattcaaacttgaatctaagatttgtagcttttgaccccaaatgtgatttctacactcaa 29823569  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 43073960 - 43074011
Alignment:
Q  40 attttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    ||||||||| || |||||||| ||||||||||||| ||||||||||||||||    
T  43073960 attttgcctatagaattgattttaacttgaaactaagatttgtagcttttga 43074011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 44439232 - 44439329
Alignment:
Q  37 ttgattttgcctctataa---ttgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    ||||||||||||||| ||   |||||||||||||||| |||  ||||| ||||||||| |  |||  ||||||| |||||||||| ||||||||||||    
T  44439232 ttgattttgcctctagaagaattgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaact 44439329  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 28028839 - 28028896
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttac 110  Q
    |||||| | ||||||||| |||  ||||||||||||||||| ||||||||||||||||    
T  28028839 aattgactataacttgaagctagaatttgtagcttttgactacaaatgtgatttttac 28028896  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 37402321 - 37402256
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaat 118  Q
    |||||| ||||||||||| |||  ||||||||||||||||||||||  ||||| ||||||| ||||    
T  37402321 aattgactctaacttgaagctagaatttgtagcttttgacttcaaacatgattgttacacttaaat 37402256  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 13246759 - 13246815
Alignment:
Q  76 gatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaactt 132  Q
    |||||||| ||||||| | |||| ||||||||||||||||||| ||||| |||||||    
T  13246759 gatttgtaccttttgattccaaacgtgatttttacactcaaatttattgatcaactt 13246815  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 28028958 - 28029010
Alignment:
Q  179 aaatcaatacattcaaaatcaagtttttatcaccgcagaaccaaacaaacact 231  Q
    |||||||| |||  |||||||| |||||||||||||| |||||||||||||||    
T  28028958 aaatcaatgcatataaaatcaattttttatcaccgcaaaaccaaacaaacact 28029010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 29968977 - 29968937
Alignment:
Q  159 attcaactcacatttaactaaaatcaatacattcaaaatca 199  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  29968977 attcaactcacttttaactaaaatcaattcattcaaaatca 29968937  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 29823620 - 29823711
Alignment:
Q  38 tgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaa 129  Q
    |||||||||||||| |||||||||  ||||||| ||| ||| ||||||||||||  ||||| | ||| |||||| |||| |  |||||||||    
T  29823620 tgattttgcctctaaaattgattcagacttgaatctatgatgtgtagcttttgaaatcaaaagcgatatttacattcaagttcattgttcaa 29823711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 32827494 - 32827589
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgta-gcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||||||| |||| ||||| || ||||||||| ||| ||||| || |||||||| | |||| |||||||| | | |||||| ||||||||||||    
T  32827494 ttgattttgcttctaaaattggttataacttgaagctaggatttttaagcttttgattccaaacgtgattttcataatcaaatatattgttcaact 32827589  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 44810374 - 44810437
Alignment:
Q  55 ttgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaat 118  Q
    |||||||||||||||| ||| |||||||||||||||||  ||||  ||||||| ||| ||||||    
T  44810374 ttgattctaacttgaagctaggatttgtagcttttgacggcaaacatgattttaacattcaaat 44810437  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 33502951 - 33502858
Alignment:
Q  38 tgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    ||||||||| || | |||||||||||||||||| |||  ||||  || |||||| |  | |||||||| ||||||| |||| ||||||||||||    
T  33502951 tgattttgcatccagaattgattctaacttgaagctagaatttcaagtttttgagtctagatgtgattattacactaaaatttattgttcaact 33502858  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 42740968 - 42741052
Alignment:
Q  46 cctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||| ||||||||||||| |||||| ||| |||||||||||||||| |  | |  |||||||||||||||||| || ||| |||||    
T  42740968 cctccataattgattcta-cttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaact 42741052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 5977166 - 5977214
Alignment:
Q  41 ttttgcctctataattgattctaacttgaaactacgatttgtagctttt 89  Q
    ||||||||| |||||||||||||||||||| |||  ||||| |||||||    
T  5977166 ttttgcctccataattgattctaacttgaagctaaaatttggagctttt 5977214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 18349758 - 18349850
Alignment:
Q  39 gattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    ||||||| ||| |||||||||| ||| |||||  || | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  18349758 gattttgactccataattgattttaatttgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttattgttcaact 18349850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 40422763 - 40422828
Alignment:
Q  26 ctcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||  || ||||||| ||||||||    
T  40422763 ctcaagtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 36271375 - 36271330
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaa 98  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||    
T  36271375 aattgattctaatttgaaactaggatttctagcttttgactacaaa 36271330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 17908165 - 17908244
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaa 117  Q
    ||||||||| ||||| ||||||||||||| |||| ||| ||||||| || ||||| | |||| |||| ||||| |||||||    
T  17908165 ttgattttgtctctagaattgattctaacatgaagctaggatttgtggc-tttgattccaaaagtgacttttatactcaaa 17908244  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 1836315 - 1836224
Alignment:
Q  38 tgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaa 129  Q
    |||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||   |||| ||||| ||||||||||| | ||||||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttgaaagcaaaagtgatatttacactcaagtttattgttcaa 1836224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 2924761 - 2924852
Alignment:
Q  40 attttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||| ||| ||||||||||||||||||||  || |  |||| | |||||||||||||  |||||||||||||||||| ||||| ||||||    
T  2924761 attttgactccataattgattctaacttgaagttagggattgtcgtttttgacttcaaacatgatttttacactcaaatatattgatcaact 2924852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 7437723 - 7437647
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacact 113  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||| ||| ||||||||  ||| |||| |||||||||    
T  7437723 ttgattttgactctagaattgattctaatttgaaactatgatttatagtttttgactctaaacgtgagttttacact 7437647  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 32927867 - 32927927
Alignment:
Q  30 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    |||||| ||||||||||||| ||| |||||||| ||||||| ||| ||||||||||||||||    
T  32927867 agtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttga 32927927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 11791837 - 11791746
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttca 128  Q
    |||| |||||||| |||| |||||||| ||| || ||| |||||||||||||||| |   || |||||||||||||| |||| || ||||||    
T  11791837 ttgaatttgcctccataactgattctaccttcaagctaggatttgtagcttttgagtctcaacgtgatttttacactaaaatttactgttca 11791746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 39648443 - 39648382
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaa 98  Q
    ||||||||  ||||| || |||||||||||| || ||| |||||||||||||||||| ||||    
T  39648443 ttgattttctctctagaactgattctaactttaagctaggatttgtagcttttgactccaaa 39648382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 11521264 - 11521189
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaa 129  Q
    ||||||||||| ||||||||||  |||| ||| ||||  || |||| |||||| |||||||||||| ||||||||||    
T  11521264 aattgattctatcttgaaactagaatttatagtttttacctccaaacgtgattcttacactcaaat-tattgttcaa 11521189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 25195580 - 25195677
Alignment:
Q  55 ttgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact--tttgttatgtgaatgtatc 150  Q
    |||||||||||||||||||| ||| |||||||||||||| |||| |||||||| | ||| ||||  |||||||||||  ||| |||||||||||||||    
T  25195580 ttgattctaacttgaaactaggatctgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatc 25195677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 10874384 - 10874328
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgact 93  Q
    |||||||||||||| ||||||||||||||||||||| |  |||||||||||||||||    
T  10874384 ttgattttgcctctgtaattgattctaacttgaaacaataatttgtagcttttgact 10874328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 10565025 - 10564934
Alignment:
Q  40 attttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||||||||| | | ||||||||||||||  || ||||||||||||||||||  |||||||||||| || || || | ||||||||||||    
T  10565025 attttgcctctaaattcgattctaacttgaagttaggatttgtagcttttgactcaaaatgtgattttaacgctaaagtttattgttcaact 10564934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 13687590 - 13687662
Alignment:
Q  54 attgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgtt 126  Q
    |||||||||||||||||  || || ||||||||| || || ||||| ||||||| |||||||||| |||||||    
T  13687590 attgattctaacttgaagataggacttgtagcttctgtctccaaatatgattttcacactcaaatttattgtt 13687662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 2234187 - 2234146
Alignment:
Q  159 attcaactcacatttaactaaaatcaatacattcaaaatcaa 200  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  2234187 attcaactcacttttaagtaaaatcaattcattcaaaatcaa 2234146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 4910880 - 4910943
Alignment:
Q  27 tcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    |||| |||| |||||| |||||| | ||||||||||| |||||| ||| ||||||||||||||||    
T  4910880 tcaattagaattgattctgcctcaaaaattgattcta-cttgaagctatgatttgtagcttttga 4910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 6653781 - 6653817
Alignment:
Q  27 tcaagtagatttgattttgcctctataattgattcta 63  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  6653781 tcaagtagaattgattctgcctctataattgattcta 6653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 10564848 - 10564812
Alignment:
Q  189 attcaaaatcaagtttttatcaccgcagaaccaaaca 225  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  10564848 attcaaaatcaattttttgtcaccgcagaaccaaaca 10564812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 29903995 - 29904075
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaa 117  Q
    ||||||||| ||||| |||||||||||||||||| |||   |||||| ||||||||| |||| ||||||||||||||||||    
T  29903995 ttgattttgactctaaaattgattctaacttgaagctatattttgtaacttttgactccaaaagtgatttttacactcaaa 29904075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 11271643 - 11271587
Alignment:
Q  35 atttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    ||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||    
T  11271643 atttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttga 11271587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 35728931 - 35729018
Alignment:
Q  42 tttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaa 129  Q
    ||||||||||||||| ||||||||||||| ||| |||||||| ||||||   | |||  |||||||||||| ||||| ||||||||||    
T  35728931 tttgcctctataattaattctaacttgaagctatgatttgtaccttttgctctaaaacatgatttttacacccaaatttattgttcaa 35729018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 22683845 - 22683939
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    ||||||||||||| | |||| ||| ||||||||| ||| ||| |||||||||||| |  ||| |||||||||||| | |||| ||||||||||||    
T  22683845 ttgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaact 22683939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 24921533 - 24921456
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||||||||||||||||||   |||||||||||||||||||| |  ||||||||||| |||||| |||| |||||||    
T  24921533 aattgattctaacttgaaacttgaatttgtagcttttgacttcatacatgatttttaca-tcaaatttatttttcaact 24921456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 33560681 - 33560580
Alignment:
Q  30 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaa 129  Q
    |||||| ||||||||||||||| |||||||||||||   || ||| |||||||||||||||| |  ||| |||||||||| ||| | ||  |||||||||    
T  33560681 agtagaattgattttgcctctagaattgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgatttttaaactgacattcattgttcaa 33560582  T
Q  130 ct 131  Q
    ||    
T  33560581 ct 33560580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 43628100 - 43628193
Alignment:
Q  38 tgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    ||||||||| || ||| |||||||||| ||||| ||| ||||||||| |||||||| ||||  ||||||| ||| | |||| ||||||||||||    
T  43628100 tgattttgcttccatagttgattctaagttgaagctaagatttgtagattttgactccaaacatgattttaacatttaaatttattgttcaact 43628193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 54705503 - 54705440
Alignment:
Q  28 caagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    |||||| | ||||||||||||| ||||||||| |||||||||| ||| | ||||||||||||||    
T  54705503 caagtataattgattttgcctcaataattgatactaacttgaagctagggtttgtagcttttga 54705440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 4014161 - 4014243
Alignment:
Q  49 ctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||||||||||||||||||| ||| |||||  | ||||||||| |||| || ||||||||| | |||| ||| ||||||||    
T  4014161 ctataattgattctaacttgaagctatgatttaaatcttttgactccaaacgtaatttttacagtaaaatttatggttcaact 4014243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 25319022 - 25319123
Alignment:
Q  30 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtga-tttttacactcaaatctattgttca 128  Q
    |||||| ||||||||| ||| | ||||||||||||||||||  || |||||||||| ||||| |  |||||||| |||||| ||| |||| |||||||||    
T  25319022 agtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagc-tttgagtctaaatgtgattttttatactgaaatttattgttca 25319120  T
Q  129 act 131  Q
    |||    
T  25319121 act 25319123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 27045573 - 27045636
Alignment:
Q  159 attcaactcacatttaactaaaatcaatacattcaaaatcaagtttttatcaccgcagaaccaaa 223  Q
    |||||||| || |||||||||||||||| |||||||||| || |||||||||||| | |||||||    
T  27045573 attcaacttacttttaactaaaatcaattcattcaaaat-aattttttatcaccgtaaaaccaaa 27045636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 17897845 - 17897795
Alignment:
Q  178 aaaatcaatacattcaaaatcaagtttttatcaccgcagaaccaaacaaaca 229  Q
    ||||||||| || |||||||||| ||||| ||||||||||||||||||||||    
T  17897845 aaaatcaattcactcaaaatcaa-tttttgtcaccgcagaaccaaacaaaca 17897795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 53782598 - 53782676
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||||||||| ||||| | | ||||||||| |||||| ||||||  | |||||||||||||||| |||  |||||||    
T  53782598 aattgattctaatttgaagccaggatttgtagattttgatttcaaacataatttttacactcaaatatatctttcaact 53782676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 3652752 - 3652792
Alignment:
Q  191 tcaaaatcaagtttttatcaccgcagaaccaaacaaacactt 232  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  3652752 tcaaaatcaa-tttttatcaccgcagaaccaaacacacactt 3652792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 26641705 - 26641625
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatt--tttacactcaaatctattgttcaact 131  Q
    |||||||  |||||||| ||| ||| || |||||||||||||||||  |||||  ||| |||||||||||||| |||||||    
T  26641705 aattgatattaacttgacactgcgacttttagcttttgacttcaaacttgatttcttttcactcaaatctattattcaact 26641625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 28904475 - 28904434
Alignment:
Q  85 cttttgacttcaaatgtgatttttacactcaaatctattgtt 126  Q
    |||||||| |||||||||||||||||||||| || |||||||    
T  28904475 cttttgacatcaaatgtgatttttacactcatatttattgtt 28904434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 37500248 - 37500207
Alignment:
Q  159 attcaactcacatttaactaaaatcaatacattcaaaatcaa 200  Q
    ||||||||||  |||||||||||||||| |||||||||||||    
T  37500248 attcaactcaattttaactaaaatcaattcattcaaaatcaa 37500207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 2206263 - 2206303
Alignment:
Q  159 attcaactcacatttaactaaaatcaatacattcaaaatca 199  Q
    ||||||||||| ||||| |||||||||| ||||||||||||    
T  2206263 attcaactcacttttaaataaaatcaattcattcaaaatca 2206303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 26617193 - 26617233
Alignment:
Q  40 attttgcctctataattgattctaacttgaaactacgattt 80  Q
    |||||||||| | ||||||||||||||||||||||| ||||    
T  26617193 attttgcctccaaaattgattctaacttgaaactacaattt 26617233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 12433053 - 12432963
Alignment:
Q  41 ttttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    ||||||||||| ||| |||||||||||||| ||| |||||||| || ||||||  ||| ||||||| ||||| ||||| ||||||||||||    
T  12433053 ttttgcctctagaatggattctaacttgaagctaggatttgtatctgttgactcaaaacgtgatttctacacacaaatttattgttcaact 12432963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 42439726 - 42439627
Alignment:
Q  32 tagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||| |||||||| |||| | |||||||||||||||||| |||  || |||||||||||| |  ||| |||||||||||||| || | ||| ||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaact 42439627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 3970504 - 3970430
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttaca 111  Q
    ||||||||||||| | ||||||||||||  |||| ||| || ||||||||||||||| ||||  |||||||||||    
T  3970504 ttgattttgcctccagaattgattctaatctgaagctaggaattgtagcttttgactccaaacttgatttttaca 3970430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 29923239 - 29923317
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||||||||||||||| ||| ||||||| | |||| |||  ||| ||||||||||||||||||| || |||| ||||    
T  29923239 aattgattctaacttgaagctaagatttgtcgtttttaactcaaaacgtgatttttacactcaaatttaatgtttaact 29923317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 42194617 - 42194543
Alignment:
Q  55 ttgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaa 129  Q
    ||||||||||| |||| ||| | |||||||||||||| |  ||||||| |||||||||| |||| ||||||||||    
T  42194617 ttgattctaacctgaagctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 42194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 9818717 - 9818769
Alignment:
Q  38 tgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    |||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||    
T  9818717 tgattttgcctccataattgattct-acttgaagctatgatttgtagcttttga 9818769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 17862503 - 17862568
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaat 118  Q
    |||||||| ||||||||| |||  || |||||||||||| |||||| |||||||| ||||||||||    
T  17862503 aattgattttaacttgaagctataatatgtagcttttgaattcaaacgtgattttcacactcaaat 17862568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 1102131 - 1102173
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttc 95  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  1102131 aattgattttaacttgaagctaggatttgtagcttttgacttc 1102173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 2937904 - 2937858
Alignment:
Q  160 ttcaactcacatttaactaaaatcaatacattcaaaatcaagttttt 206  Q
    |||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  2937904 ttcaactcacctttagctaaaatcaattcattcaaaatcaatttttt 2937858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 38845761 - 38845819
Alignment:
Q  32 tagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttg 90  Q
    |||| ||||||||||||||||| |||||||| ||||||| |||  ||| ||||||||||    
T  38845761 tagaattgattttgcctctatagttgattctgacttgaagctagaattcgtagcttttg 38845819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 1105410 - 1105479
Alignment:
Q  26 ctcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttc 95  Q
    |||||||||| |||||||||| |  | |||||||| ||||| |||  || ||||||||||||||||||||    
T  1105410 ctcaagtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttc 1105479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 10898704 - 10898737
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaa 70  Q
    ||||||||||||||| ||||||||||||||||||    
T  10898704 ttgattttgcctctagaattgattctaacttgaa 10898737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 49634127 - 49634049
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||||||||||||||||| ||| ||||||||||||||| ||  |||||||||| |||||||||| | |||| |||||||    
T  49634127 aattgattctaacttgaagctaggatttgtagcttttgcctctaaatgtgattattacactcaagtttattattcaact 49634049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 21513434 - 21513364
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctatt 123  Q
    |||||||| ||||||  | ||| |||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  21513434 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatt 21513364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 23290269 - 23290327
Alignment:
Q  32 tagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttg 90  Q
    |||| |||||| || ||||||| |||||||||||||||||||| |||||||||||||||    
T  23290269 tagaattgattatgtctctatagttgattctaacttgaaactatgatttgtagcttttg 23290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 1441491 - 1441431
Alignment:
Q  30 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    |||||| ||||||||| ||||||||| || |||| |||||||||| ||||||||||||||||    
T  1441491 agtagaattgattttgtctctataatcgactcta-cttgaaactaggatttgtagcttttga 1441431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 48411025 - 48411065
Alignment:
Q  30 agtagatttgattttgcctctataattgattctaacttgaa 70  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  48411025 agtagatttaattttgcctctagaattgattctaacttgaa 48411065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 49891290 - 49891346
Alignment:
Q  76 gatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaactt 132  Q
    |||||||||| |||||||  ||||||||||||||||||||||| |  ||||||||||    
T  49891290 gatttgtagcatttgactctaaatgtgatttttacactcaaatttgctgttcaactt 49891346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 43965618 - 43965709
Alignment:
Q  40 attttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    |||| ||||| | |||||||| ||||||||| ||| ||||| ||| ||||| |||| || || | |||||||||||||  ||||||||||||    
T  43965618 atttagcctcaagaattgattttaacttgaagctaggatttatagtttttgccttcgaacgtaaattttacactcaaaattattgttcaact 43965709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 29064050 - 29064106
Alignment:
Q  53 aattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgattttta 109  Q
    ||||||||||||||| ||| || ||||| || ||||||||||||||  |||||||||    
T  29064050 aattgattctaacttaaaaatatgatttataacttttgacttcaaacatgattttta 29064106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 48832910 - 48832957
Alignment:
Q  76 gatttgtagcttttgacttcaaatgtgatttttacactcaaatctatt 123  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  48832910 gatttgtagcttttgactccaaatgtgatttttacactcaaatttatt 48832957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 32088687 - 32088585
Alignment:
Q  26 ctcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgt 125  Q
    |||||||||| |||||||| |||  | |||||||||||||||||| ||| |||||  ||||||||| |  ||| |||||||||||||| |||| ||||||    
T  32088687 ctcaagtagaattgatttt-cctacaaaattgattctaacttgaagctaggatttcgagcttttgatt--aaaagtgatttttacactgaaatttattgt 32088591  T
Q  126 tcaact 131  Q
    ||||||    
T  32088590 tcaact 32088585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 35592478 - 35592571
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaact 131  Q
    ||||||||| ||||| ||||||||||||||| || ||| ||||| ||||||||||||  |||  | ||||||||||| |||| |||| |||||||    
T  35592478 ttgattttgactctagaattgattctaacttaaagctaggatttttagcttttgactctaaacat-atttttacacttaaatttattcttcaact 35592571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 12655219 - 12655320
Alignment:
Q  30 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttcaa 129  Q
    |||||||| || |||||||||| |||| ||||||||||||| |||  ||||||||| ||||| |  |||| |||| ||||| || || | ||||||||||    
T  12655219 agtagattcgactttgcctctagaattaattctaacttgaagctagaatttgtagcatttgagtctaaatatgatctttactctaaagtttattgttcaa 12655318  T
Q  130 ct 131  Q
    ||    
T  12655319 ct 12655320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 6021776 - 6021839
Alignment:
Q  27 tcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttga 91  Q
    ||||||||| ||||||||||||||| ||| |||||| ||||||| ||| ||| ||||||||||||    
T  6021776 tcaagtagaattgattttgcctctagaatcgattct-acttgaagctaggatatgtagcttttga 6021839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 5167381 - 5167430
Alignment:
Q  180 aatcaatacattcaaaatcaagtttttatcaccgcagaaccaaacaaacac 230  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||| ||||    
T  5167381 aatcaattcattcaaaatcaa-ttttcatcaccgcagaaccaaacacacac 5167430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 18325500 - 18325402
Alignment:
Q  30 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttca 128  Q
    |||||| ||||||||||||| | | || | ||||||||||| ||| ||||||  |||||||| |  |||||||||||||||| | |||| || ||||||    
T  18325500 agtagaattgattttgcctccaaagttaactctaacttgaagctaggatttgatgcttttgagtctaaatgtgatttttacattaaaatttactgttca 18325402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 28024698 - 28024776
Alignment:
Q  37 ttgattttgcctctataattgattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactca 115  Q
    |||||||| |||||| ||||| ||||||||| || |||  |||||||||||| |||| ||||  || ||||||||||||    
T  28024698 ttgatttttcctctagaattggttctaacttaaagctataatttgtagctttcgactccaaacatggtttttacactca 28024776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 31785137 - 31785067
Alignment:
Q  57 gattctaacttgaaactacgatttgtagcttttgacttcaaatgtgatttttacactcaaatctattgttc 127  Q
    ||||||| |||||| ||| ||| |||||||| | ||| |||| |||||| |||||||||||| ||||||||    
T  31785137 gattctagcttgaatctaggatatgtagcttattactccaaaagtgattgttacactcaaatttattgttc 31785067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 6568602 - 6568686
Alignment:
Q  77 atttgtagcttttgactt-caaatgtgatttttacactcaaatctattgttcaactt-ttgttatgtgaatgtatccaatcataa 159  Q
    |||| ||||||||||||| ||||  | ||||||||||| |||| ||||||| ||||| || |||||||||||||| ||| |||||    
T  6568602 atttatagcttttgacttgcaaacattatttttacacttaaatttattgttaaacttatttttatgtgaatgtattcaaacataa 6568686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 21636660 - 21636616
Alignment:
Q  26 ctcaagtagatttgattttgcctctataattgattctaacttgaa 70  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||    
T  21636660 ctcaagtagatttgttttcgcctctataatagattttaacttgaa 21636616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 39289239 - 39289188
Alignment:
Q  171 tttaactaaaatcaatacattcaaaatcaagtttttatcaccgcagaaccaaa 223  Q
    ||||| ||||||||||  |||||||||||| |||||||||| |||||||||||    
T  39289239 tttaagtaaaatcaattgattcaaaatcaa-tttttatcacagcagaaccaaa 39289188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 12421 - 12366
Alignment:
Q  26 ctcaagtagatttgattttgcctctataattgattctaacttgaaactacgatttg 81  Q
    |||||||||| ||||||||||||| | || ||||||||||||||| |||| |||||    
T  12421 ctcaagtagaattgattttgcctccagaaatgattctaacttgaagctacaatttg 12366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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