View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19686_low_6 (Length: 373)
Name: NF19686_low_6
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19686_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 41308363 - 41308148
Alignment:
| Q |
35 |
aagatgctcccaattctacttgccttgcacagtacggtgtgttgttttctaaaaatattgttgattcacataacgaatcaaacatcattgatgattcaaa |
134 |
Q |
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| T |
41308363 |
aagatgctcccaattctacttgccttgcacagtacggtgtgttgttttctaaaaatattgttgattcacataacgaatcaaacatcattgatgattcaaa |
41308264 |
T |
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| Q |
135 |
aggcaaatactaatattaaacacagcacggtgnnnnnnnnnaaaagaagattctataaaataaagttagaatctattaccaacataagggtaagaatctt |
234 |
Q |
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| T |
41308263 |
aggcaaatactaatattaaacacagcacggtgttttttttttaaagaagattctataaaataaagttagaatctattgccaacataagggtaagaatctt |
41308164 |
T |
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| Q |
235 |
atagaattgatgctac |
250 |
Q |
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||||||||||| |||| |
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| T |
41308163 |
atagaattgatactac |
41308148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 41305624 - 41305564
Alignment:
| Q |
251 |
atcttgctaaaagaaaattaacatattaatatgcaatcaaatagtgactatcaggcttcctcc |
313 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41305624 |
atcttgttaaaagaaaattaacatattaatatgcaatcaaatagtgacta--aggcttcctcc |
41305564 |
T |
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