View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19686_low_8 (Length: 282)

Name: NF19686_low_8
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19686_low_8
NF19686_low_8
[»] chr7 (4 HSPs)
chr7 (10-157)||(30907839-30907986)
chr7 (203-239)||(5924201-5924237)
chr7 (203-239)||(9355305-9355341)
chr7 (203-239)||(36072558-36072594)
[»] chr2 (2 HSPs)
chr2 (10-72)||(17334144-17334206)
chr2 (206-238)||(15161915-15161947)
[»] chr5 (3 HSPs)
chr5 (203-237)||(30774735-30774769)
chr5 (203-240)||(33347217-33347254)
chr5 (203-239)||(639504-639540)
[»] chr1 (2 HSPs)
chr1 (202-240)||(40094652-40094690)
chr1 (11-71)||(26227491-26227551)
[»] chr4 (1 HSPs)
chr4 (203-239)||(31786358-31786394)
[»] chr3 (1 HSPs)
chr3 (204-267)||(8340078-8340142)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 30907839 - 30907986
Alignment:
Q  10 attttcagaacaataaattcattctcgttgtaatcaaacagacgtgcaatttatatgagttttggattcaaggtgtattaaattagtatgcactaaattt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30907839 attttcagaacaataaattcattctcgttgtaatcaaacagacgtgcaatttatacgagttttggattcaaggtgtattaaattagtatgcactaaattt 30907938  T
Q  110 acatcggaagaattcatattaaaaaataaacaagtaaataacaaaggg 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30907939 acatcggaagaattcatattaaaaaataaacaagtaaataacaaaggg 30907986  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 5924237 - 5924201
Alignment:
Q  203 atagtatccatcctcatatccgcgtttgtaaaaaata 239  Q
    |||||| |||||| |||||||||||||||||||||||    
T  5924237 atagtacccatccccatatccgcgtttgtaaaaaata 5924201  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 9355341 - 9355305
Alignment:
Q  203 atagtatccatcctcatatccgcgtttgtaaaaaata 239  Q
    |||||||||||||||||| || |||||||||||||||    
T  9355341 atagtatccatcctcatacccacgtttgtaaaaaata 9355305  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 36072558 - 36072594
Alignment:
Q  203 atagtatccatcctcatatccgcgtttgtaaaaaata 239  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  36072558 atagtatccatccccatacccgcgtttgtaaaaaata 36072594  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 17334144 - 17334206
Alignment:
Q  10 attttcagaacaataaattcattctcgttgtaatcaaacagacgtgcaatttatatgagtttt 72  Q
    ||||||||||||| || ||||||||| || |||| ||||||||||||||||||||||||||||    
T  17334144 attttcagaacaacaatttcattctcattataattaaacagacgtgcaatttatatgagtttt 17334206  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 15161915 - 15161947
Alignment:
Q  206 gtatccatcctcatatccgcgtttgtaaaaaat 238  Q
    |||||||||| ||||||||||||||||||||||    
T  15161915 gtatccatccccatatccgcgtttgtaaaaaat 15161947  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 30774735 - 30774769
Alignment:
Q  203 atagtatccatcctcatatccgcgtttgtaaaaaa 237  Q
    ||||||||||||| |||||||||||||||||||||    
T  30774735 atagtatccatccccatatccgcgtttgtaaaaaa 30774769  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 33347254 - 33347217
Alignment:
Q  203 atagtatccatcctcatatccgcgtttgtaaaaaatat 240  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  33347254 atagtacccatccccatatccgcgtttgtaaaaaatat 33347217  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 639540 - 639504
Alignment:
Q  203 atagtatccatcctcatatccgcgtttgtaaaaaata 239  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  639540 atagtacccatccttatatccgcgtttgtaaaaaata 639504  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 40094690 - 40094652
Alignment:
Q  202 catagtatccatcctcatatccgcgtttgtaaaaaatat 240  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  40094690 catagtatccatccccatacccgcgtttgtaaaaaatat 40094652  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 26227491 - 26227551
Alignment:
Q  11 ttttcagaacaataaattcattctcgttgtaatcaaacagacgtgcaatttatatgagttt 71  Q
    |||||| ||||| || ||| ||||||||||||| |||| | | ||||||||||||||||||    
T  26227491 ttttcacaacaacaatttcgttctcgttgtaattaaacgggcatgcaatttatatgagttt 26227551  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 31786358 - 31786394
Alignment:
Q  203 atagtatccatcctcatatccgcgtttgtaaaaaata 239  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  31786358 atagtattcatcctcatacccgcgtttgtaaaaaata 31786394  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 8340078 - 8340142
Alignment:
Q  204 tagtatccatcctcatatccgcgtttgtaaaaaatatc-gtatccttgtggacaacaactttaat 267  Q
    |||||||||||| |||| ||||||||||||||||| || ||| ||| ||| | ||||||||||||    
T  8340078 tagtatccatccccatacccgcgtttgtaaaaaatgtctgtaccctcgtgaaaaacaactttaat 8340142  T

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