View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19686_low_9 (Length: 250)

Name: NF19686_low_9
Description: NF19686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19686_low_9
NF19686_low_9
[»] chr3 (10 HSPs)
chr3 (13-122)||(33635287-33635396)
chr3 (13-122)||(10258803-10258913)
chr3 (13-73)||(11335130-11335190)
chr3 (13-73)||(33986874-33986934)
chr3 (13-73)||(39851098-39851157)
chr3 (83-122)||(47346070-47346109)
chr3 (13-50)||(23241524-23241561)
chr3 (13-50)||(26725948-26725985)
chr3 (13-50)||(30464748-30464785)
chr3 (13-50)||(37599548-37599585)
[»] chr1 (4 HSPs)
chr1 (13-122)||(12793066-12793175)
chr1 (13-122)||(9294026-9294135)
chr1 (13-73)||(48302842-48302902)
chr1 (13-50)||(44258174-44258211)
[»] chr6 (1 HSPs)
chr6 (13-122)||(24067801-24067910)
[»] chr2 (6 HSPs)
chr2 (13-122)||(7153840-7153949)
chr2 (13-122)||(31901321-31901430)
chr2 (13-73)||(39678691-39678751)
chr2 (13-56)||(17513424-17513467)
chr2 (13-50)||(24129158-24129195)
chr2 (13-50)||(37314603-37314640)
[»] chr8 (5 HSPs)
chr8 (13-122)||(41725949-41726058)
chr8 (13-122)||(19726303-19726412)
chr8 (13-122)||(31008124-31008233)
chr8 (13-69)||(3656264-3656320)
chr8 (13-73)||(13486785-13486845)
[»] chr7 (5 HSPs)
chr7 (13-122)||(47423851-47423960)
chr7 (13-122)||(36858537-36858646)
chr7 (13-122)||(29983639-29983749)
chr7 (13-50)||(14801654-14801691)
chr7 (13-50)||(15248646-15248683)
[»] chr5 (5 HSPs)
chr5 (13-122)||(8760693-8760802)
chr5 (13-73)||(6514120-6514180)
chr5 (13-73)||(35758437-35758497)
chr5 (17-73)||(40144315-40144371)
chr5 (13-50)||(23024236-23024273)
[»] chr4 (4 HSPs)
chr4 (13-71)||(56077036-56077094)
chr4 (13-63)||(55497827-55497876)
chr4 (13-50)||(11861431-11861468)
chr4 (13-50)||(23611199-23611236)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 33635287 - 33635396
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||    
T  33635287 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 33635386  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  33635387 aagatagaat 33635396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 10258913 - 10258803
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctct-nnnnnnntagaaacgtttacttgtataatatattat 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |        |||||||||||||||||||||||||||||    
T  10258913 aatatttaaatgataagagtgagcttgattccttaaaataaaaaagagtgtttggttccctttaaaaaaaatagaaacgtttacttgtataatatattat 10258814  T
Q  112 gaagatagaat 122  Q
    |||||||||||    
T  10258813 gaagatagaat 10258803  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 11335190 - 11335130
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  11335190 aatatttaaatgataagagtgtgcttggttccttaaaataaaaaagagtgtttggttccct 11335130  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 33986934 - 33986874
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  33986934 aatatttaaatgataagagtgtgcttggttccttaaaataaaaaagagtgtttggttccct 33986874  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 39851098 - 39851157
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  39851098 aatatttaaatgataagagtgtgcttggttccttaaaataaaaaa-agtgtttggttccct 39851157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 47346109 - 47346070
Alignment:
Q  83 tagaaacgtttacttgtataatatattatgaagatagaat 122  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47346109 tagaaacgtttacttgtataatatattatgaagatagaat 47346070  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 23241561 - 23241524
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  23241561 aatatttaaatgataagagtgtgcttggttacttaaaa 23241524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 26725948 - 26725985
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  26725948 aatatttaaatgataagagtgtgcttggttacttaaaa 26725985  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 30464785 - 30464748
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  30464785 aatatttaaatgataagagtgtgcttggttacttaaaa 30464748  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 37599585 - 37599548
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  37599585 aatatttaaatgataagagtgtgcttggttacttaaaa 37599548  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 12793066 - 12793175
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||    
T  12793066 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 12793165  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  12793166 aagatagaat 12793175  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 9294026 - 9294135
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||    
T  9294026 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgtttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 9294125  T
Q  113 aagatagaat 122  Q
     |||||||||    
T  9294126 gagatagaat 9294135  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 48302902 - 48302842
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  48302902 aatatttaaatgataagagtgtgtttggttccttaaaataaaaaagagtgtttggttccct 48302842  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 44258174 - 44258211
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  44258174 aatatttaaatgataagagtgtgcttggttacttaaaa 44258211  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 24067910 - 24067801
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||    
T  24067910 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgtttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 24067811  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  24067810 aagatagaat 24067801  T

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Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 7153840 - 7153949
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||    
T  7153840 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgtttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 7153939  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  7153940 aagatagaat 7153949  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 31901321 - 31901430
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||    
T  31901321 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtggttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 31901420  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  31901421 aagatagaat 31901430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 39678691 - 39678751
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||    
T  39678691 aatatttaaatgataagagtgtgcttggttccttaaaataaaaaagagtgtttgattccct 39678751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 17513424 - 17513467
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaa 56  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||    
T  17513424 aatatttaaatgataagagtgtgcttggttacttaaaaaaaaaa 17513467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 24129158 - 24129195
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  24129158 aatatttaaatgataagagtgtgcttggttacttaaaa 24129195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 37314640 - 37314603
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  37314640 aatatttaaatgataagagtgtgcttggttacttaaaa 37314603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 41726058 - 41725949
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |       ||||||||||||||||||||||||||||||    
T  41726058 aatatttaaatgataagagcgagcttggttccttaaaataaaaaagagtgtttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 41725959  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  41725958 aagatagaat 41725949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 19726412 - 19726303
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |       ||||||||||||||||||||||||||||||    
T  19726412 aatatttaaatgataacagtgaacttggttccttaaaataaaaaagattgcttggttccctttaaaaaaatagaaacgtttacttgtataatatattatg 19726313  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  19726312 aagatagaat 19726303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 31008233 - 31008124
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |       ||||||| ||||||||||||||||||||||    
T  31008233 aatatttaaatgataagagtgagcttgattccttaaaataaaaaagagtgcttggtttcctttaaaaaaatagaaacatttacttgtataatatattatg 31008134  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  31008133 aagatagaat 31008124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 3656264 - 3656320
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggtt 69  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  3656264 aatatttaaatgataagagtgtgcttggttccttaaaataaaaaagagtgtttggtt 3656320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 13486845 - 13486785
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||    
T  13486845 aatatttaaatgataagagtgtgcttgattccttaaaataaaaaggagtgtttggttccct 13486785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 47423851 - 47423960
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |       ||||||||||||||||||||||||||||||    
T  47423851 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgtttggtttcctttaaaaaaatagaaacgtttacttgtataatatattatg 47423950  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  47423951 aagatagaat 47423960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 36858537 - 36858646
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |       ||||||||||||||||||||||||| ||||    
T  36858537 aatatttaaatgataaaagtgagcttggttccttaaaataaaaaagagtgcttggttccatttaaaaaaatagaaacgtttacttgtataatatactatg 36858636  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  36858637 aagatagaat 36858646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 29983639 - 29983749
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctct-nnnnnnntagaaacgtttacttgtataatatattat 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |        |||||||||||||||||||||||||||||    
T  29983639 aatatttaaatgataagagtgagtttggttccttaaaataaaaaagagtgcttagttccctttaaaaaaaatagaaacgtttacttgtataatatattat 29983738  T
Q  112 gaagatagaat 122  Q
    |||||||||||    
T  29983739 gaagatagaat 29983749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14801691 - 14801654
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  14801691 aatatttaaatgataagagtgtgcttggttacttaaaa 14801654  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 15248683 - 15248646
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  15248683 aatatttaaatgataagagtgtgcttggttacttaaaa 15248646  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 8760802 - 8760693
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccctctnnnnnnntagaaacgtttacttgtataatatattatg 112  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |       ||||||| ||||||||||||||||||||||    
T  8760802 aatatttaaaagataagagtgagcttggttccttaaaattaaaaagagtgattggttccctttaaaaaaatagaaacatttacttgtataatatattatg 8760703  T
Q  113 aagatagaat 122  Q
    ||||||||||    
T  8760702 aagatagaat 8760693  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 6514180 - 6514120
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  6514180 aatatttaaatgataagagtgtgcttggttccttaaaataaaaaagagtgtttagttccct 6514120  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 35758437 - 35758497
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  35758437 aatatttaaatgataagagtgtggttggttccttaaaataaaaaagagtgattggttccct 35758497  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 40144315 - 40144371
Alignment:
Q  17 tttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttccct 73  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  40144315 tttaaatgataagagtgtgcttggttccttaaaataaaaaagagtgtttggttccct 40144371  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 23024236 - 23024273
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  23024236 aatatttaaatgataagagtgtgcttgattccttaaaa 23024273  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 56077094 - 56077036
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgcttggttcc 71  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  56077094 aatatttaaatgataagagtgtgcttggttccttaaaataaaaaagagtgcttggttcc 56077036  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 55497827 - 55497876
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaataaaaaagagtgc 63  Q
    ||||||||||||||||||||| |||||||| ||||||| |||| |||||||    
T  55497827 aatatttaaatgataagagtgtgcttggttacttaaaa-aaaatagagtgc 55497876  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 11861431 - 11861468
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  11861431 aatatttaaatgataagagtgtgcttggttacttaaaa 11861468  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 23611236 - 23611199
Alignment:
Q  13 aatatttaaatgataagagtgagcttggttccttaaaa 50  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  23611236 aatatttaaatgataagagtgtgcttggttacttaaaa 23611199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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