View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_1 (Length: 724)
Name: NF19687_high_1
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 70 - 429
Target Start/End: Complemental strand, 7469165 - 7468793
Alignment:
| Q |
70 |
gttacatattttatgtatgtta--aattatgaaactacaaaatattaaagtaaaacatatgagtttactcaaacactttcttaacaagtggggtcgatac |
167 |
Q |
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| T |
7469165 |
gttacatattttatgtatgttataaactatgaaactacaaaata---aagtaaaatatgtgagtctactcaaacgctttcttaacaagtggggtcggtac |
7469069 |
T |
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| Q |
168 |
tcacct----------gatgcaataaagaagcgagctttcggctgctatgtgtgcattcttgtcaacatcaacctatccaagagaatttttgaagaggtg |
257 |
Q |
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| T |
7469068 |
tcgcctcttgattgatgatgcaataaagaagcgagcttttggccgctatgtgtgcattctagtcaacatcaacctatccaagagaatttttgaagaggtg |
7468969 |
T |
|
| Q |
258 |
gtggttgaacttgagggctttgcgttctgtgttgacattgtttatgatagatcacctaagttttgcaccaattgtttaaccattggacactcaatttctc |
357 |
Q |
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| T |
7468968 |
gtggttgaacttgagggctttgcgttctgtgttgacattgtttatgatagattacctaagttttgcaccaattgtttaaccattggacactcaatatctc |
7468869 |
T |
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| Q |
358 |
tttgcaacaagctacaccccaagaacaaggaggaaatggtgaagccga----ataaacccaaaatgaagggtgatt |
429 |
Q |
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| T |
7468868 |
tttgcaacaagctacaccccaagaacaaggaggaaatggtgaagctgaatatataaacccaaaatgaagggtgatt |
7468793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 7469668 - 7469630
Alignment:
| Q |
20 |
acaaagtcaaatttatttagaatctttggacgatactttg |
59 |
Q |
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| T |
7469668 |
acaaagtcaaatttatttagaatc-ttggacgatactttg |
7469630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 1331049 - 1331120
Alignment:
| Q |
90 |
taaattatgaaactacaaaatattaaagtaaaacatatgagtttactcaaacactttcttaacaagtggggt |
161 |
Q |
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| T |
1331049 |
taaactatgaaactacaaaatattaaagtaaaacatgtgagtctactcaaacactttcttaataagtggggt |
1331120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 1327278 - 1327314
Alignment:
| Q |
20 |
acaaagtcaaatttatttagaatctttggacgatact |
56 |
Q |
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| T |
1327278 |
acaaagtcaaatttatttagaatctttggacgatact |
1327314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 435
Target Start/End: Complemental strand, 8304401 - 8304253
Alignment:
| Q |
287 |
tgttgacattgtttatgatagatcacctaagttttgcaccaattgtttaaccattggacactcaatttctctttgcaacaagctacaccccaagaacaag |
386 |
Q |
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|||| ||||||||||||| |||| | ||||||| |||||||||| | ||| || |||| | |||||||| ||||||| | ||||| ||||||| |
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| T |
8304401 |
tgtttacattgtttatgaaagattgtatgagttttgttccaattgtttcaacatagggcacttagtttctcttcgcaacaaattgcacccagagaacaat |
8304302 |
T |
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| Q |
387 |
gaggaaatggtgaagccgaataaacccaaaatgaagggtgattcttcta |
435 |
Q |
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| T |
8304301 |
gaggatagggtgaagccggataaagccaaattgaagggtgattattcta |
8304253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 591
Target Start/End: Original strand, 9455002 - 9455062
Alignment:
| Q |
531 |
gataatacaaaggaggaagataacgacaaagttagatctcatgaggaccaccatgaggagg |
591 |
Q |
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| T |
9455002 |
gataagacagaggaggaagataacgataatgtttaatctcacgaggaccaccatgaggagg |
9455062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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