View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_10 (Length: 496)
Name: NF19687_high_10
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 46690456 - 46690262
Alignment:
| Q |
18 |
ttttgaagataactaaacgtggaactggaatcctagttattgtaggatatgttttctagaaagatagtcaagtgttagggttactttaaatccaactaat |
117 |
Q |
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| T |
46690456 |
ttttgaagataactaaacgtggaactggaatcctagttattgtaggatatgttttctagaaagatagtcaagtgttagggttactttaaatccaactaat |
46690357 |
T |
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| Q |
118 |
actatccagttgtgtttccttgaactctctgaagatggtggaacagccacacgatcagaagaactcctttgtttccatgtcgtcacaagaacagg |
212 |
Q |
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| T |
46690356 |
actatccacttgtgtttccttgaactctctgaagatggtggaacagccacacgatcagaataactcctttgtttccatgtcgtcacaagaacagg |
46690262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 309 - 486
Target Start/End: Complemental strand, 46690168 - 46689991
Alignment:
| Q |
309 |
gagatgaaacacatgaataatcgataccaattttatatgttttaaaacgatgaagggtttaatcaaaaacgaaattcagttttatactaaatatgcagat |
408 |
Q |
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| T |
46690168 |
gagatgaaacacatgaataatcgataccaattttatatgttttaaaacgatgaagggtttaatcaaaaacgaaattcagttttatactgaatatgcagat |
46690069 |
T |
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| Q |
409 |
ttagtttgttcatgtattaattaagcaagatttccttgtatattgtgtgcaaataattgaggattcgttctacctttg |
486 |
Q |
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| T |
46690068 |
ttagtttgttcatgtattaattaagcaagatttccttgtatattgtgtgcaaataattgaggattcgttctacctttg |
46689991 |
T |
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