View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_14 (Length: 440)
Name: NF19687_high_14
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 45217776 - 45217358
Alignment:
| Q |
18 |
atcaccatcatcacttggaattcaggtgcactcttctatgattcaaaaaccttcttatcaaacaccgtttttcggtttgtcacgttactgtggtccaaac |
117 |
Q |
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| T |
45217776 |
atcaccatcatcacttggaattcaggtgcactcttctatgattcaaaaaccttcttatcaaacaccgtttttcggtttgtcacgttactgtggtccaaac |
45217677 |
T |
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| Q |
118 |
cagtggcagaagctgcctatatattcacaaccagcatcaaggaatcttcatgttgaggcagaaactgatggatcatcatccttgactagtgccataccta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217676 |
cagtggcagaagctgcctatatattcacaaccagcatcaaggaatcttcatgttgaggcagaaactgatggatcatcatccttgactagtgccataccta |
45217577 |
T |
|
| Q |
218 |
caagatcagggaaattttctccaagaaaggtgcaaaatgtatttggaggttataatgttacaagtttgaagaataaacaagaggagttgcagaagcttga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217576 |
caagatcagggaaattttctccaagaaaggtgcaaaatggatttggaggttataatgttacaagtttgaagaataaacaagaggagttgcagaagcttga |
45217477 |
T |
|
| Q |
318 |
tttgtccctcaaactctaagtgtttttaccattcatgtcatattcaatattgtgtcttaaatttttgtctgttcactaa----tttgtctttgttataat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
45217476 |
cttgtccctcaaactctaagtgtttttaccattcatgtcatattcaatattgtgtcttaaatttttgtctgttcactaaaagctgatattttgttataat |
45217377 |
T |
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| Q |
414 |
gaattaattctcctttgct |
432 |
Q |
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||||||||||||||||||| |
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| T |
45217376 |
gaattaattctcctttgct |
45217358 |
T |
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