View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19687_high_21 (Length: 394)
Name: NF19687_high_21
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 34 - 289
Target Start/End: Original strand, 34113683 - 34113931
Alignment:
| Q |
34 |
tcaactataatttaaaacaaaagatattatgggagggnnnnnnntaatatgatcatgataatatgcaataaaagagggaggaaaaatgaacgcnnnnnnn |
133 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34113683 |
tcaactataattaaaaacaaaagatattatgggagggaaaaaaataatatgatcatgataatatgcaataaaagagggaggaaaaatgaacgca------ |
34113776 |
T |
|
| Q |
134 |
gaagaaagaaagattatatattaaaacataccatcaccatctttatcaaacaagctaaatgcttctttgaattcagagatctgatcgtctgtgagttgat |
233 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
34113777 |
-aaaaaagaaagattatatattaaaacataccatcaccatctttatcaaacaagctaaatgcttctttgaattcagagatctgatcatctgttagttgat |
34113875 |
T |
|
| Q |
234 |
ctgccatttgatatattgctctttctttgaaaatggaatagttctttatgcttttc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
34113876 |
ctgccatttgatatattgctctttctttgaaaatggaatatttctttatgtttttc |
34113931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 34113983 - 34114024
Alignment:
| Q |
339 |
ctcaaactaacaatcttgttccgacaaaacctctccttcttg |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34113983 |
ctcaaactaacaatcttgttccgacaaaacctctccttcttg |
34114024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 8928072 - 8928150
Alignment:
| Q |
162 |
taccatcaccatctttatcaaacaagctaaatgcttctttgaattcagagatctgatcgtctgtgagttgatctgccat |
240 |
Q |
| |
|
||||||| ||||| || || || ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8928072 |
taccatcgccatccttgtcgaataagctgaaagcttccttgaactcagagatctgatcgtctgtgagttgatctgccat |
8928150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 38319624 - 38319704
Alignment:
| Q |
161 |
ataccatcaccatctttatcaaacaagctaaatgcttctttgaattcagagatctgatcgtctgtgagttgatctgccatt |
241 |
Q |
| |
|
|||||||| ||||| ||||| || | ||| || ||||| ||||| ||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
38319624 |
ataccatcgccatccttatcgaataggctgaaagcttccttgaactcagagatctgctcgtcggtgagttgatcggccatt |
38319704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University