View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19687_high_24 (Length: 384)
Name: NF19687_high_24
Description: NF19687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19687_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 37234712 - 37234363
Alignment:
| Q |
13 |
aataacatgtgcaatactataaaagaggggggactcaaaattatggagaccagctactcgtatnnnnnnntatatcgaattcgagaggagcatatttcaa |
112 |
Q |
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| T |
37234712 |
aataacatgtgcatcactataaaagaggggg-agtcaaaattatggagaccagctactcgtataaaaaaatatatcgaatttgagaggagcatatttcaa |
37234614 |
T |
|
| Q |
113 |
gtttttaaacaactaccattacaccagccaaattgaactactagctttaaacgtagttatctcagtagttgactttagtacctaacaaatttaacactat |
212 |
Q |
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|||||||| || ||| |||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37234613 |
gtttttaatca-------ttagaccaactaaactgaactactagctttaaacgtagctatctcagtagttgactttagtacctaataaatttaacactat |
37234521 |
T |
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| Q |
213 |
agtttggtcgcaacttacaagtgaaagagctgctctctgcaattaaggatgagaaatttactctcatgaatatcgaatgtccccaacgacagttaact-a |
311 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37234520 |
agtttggtcgcaacttacaagtgaaagagctgttctctgcaattaagaatgagaaatttactctcatgaatatcgaatgtcctcaacgacagttaactgt |
37234421 |
T |
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| Q |
312 |
cattcgtctctaatggcagttaattgtcgtttgctaaatgaaccaacaacggttaact |
369 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37234420 |
cattcgtctctaacggcagttaattgtcgttcgctaaatgaaccaacaacggttaact |
37234363 |
T |
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